|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 619 fasta sequence
[GTTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCAGCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAGAGGTGAACTCGGGGTGATACTGGACACCCACGAAGTACGGATGGTCATCAAGCTCGATGACCTCCATCCTCTCGCCCTCGATGTCCTGACCCACAAAGCGGAAGCCCTTGTCTTCAAAGTGACTCTTG-AGTTCTGGGTTCACCTCAAAGCGATGTCGGTGCCGCTCCTCCACGTACTCGGC-GTCTCCGTAGAGTTTGCGCAGGATGCTGCTGGGGGACTTGAAGAGCGT-CCGCCTCTTCCCGAGGCTCATGGTCCCGCCCATCTGCCCGGGGTTGTGCTCCGGCATGTCGATCACCACCGGGTGCTTCGTTTCTGGGTC]
[+] EMBL CA329736 [GTTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCAGCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAAAAGTGAACTCCGGGTGATACTGGACACCCAACAAGTACCGATGGTCATCAAGCTCCAATGACT CATCCTCTTCCCCTTGATGGCCTGAACCAC AAGCGGAAACCCTTGGCTTTCAAATGACTCTTGAAGTCCTTGGTTCACTTCAAAGCGATG CCGTGCCGCTCCTTCACGTAATCCGCGGTTTCCCTAAAATTTCCCCAAGATTCTTCTTGGGGAACTTAAGAAAGTCCCCCCTCTTCCCGAAGCTCTTGTTCC ]
[+] EMBL CA331269 [ TGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCAGCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAGAGGTGAACTCGGGGTGATACTGGACACCCACGAAGTACGGATGGTCATCAAGCTCGATGACCTCCATCCTCTCGCCCTCGATGTCCTGACCCACAAAGCGGAAGCCCTTGTCTTCAAAGTGACTCTTG AGTTCTGGGTTCACCTCAAAGCGATGTCGGTGCCGCTCCTCCACGTACTCGGC GTCTCCGTAGAGTTTGCGCAGGATGCTGCTGGGGGACTTGAAGAGCGT CCGCCTCTTCCCGAGCCTCATGGTCCCGCCCATCTGCCCGGGGTTGTGCTCCGGCATGTCGATCACCACCGGGTGCTTCGTTTCTGGGTC]
[+] EMBL CA329704 [ TGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCAGCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAGAGGTGAACTCGGGGTGATACTGGACACCCACGAAGTACGGATGGTCATCAAGCTCGATGACCTCCATCCTCTCGCCCTCGATGTCCTGACCCACAAAGCGGAAGCCCTTGTCTTCAAAGTGACTCTTG AGTTCTGGGTTCACCTCAAAGCGATGTCGGTGCCGCTCCTCCACGTACTCGGC GTCTCCGTAGAGTTTGCGCAGGATGCTGCTGGGGGACTTGAAGAGCGT CCGCCTCTTCCCGAGCCTCATGGTCCCGCCCATCTGCCCGGGGTTGTGCTCCGGCATGTCGATCACCACCGGGTGCTTCCTTTCTGG ]
[+] EMBL CA329776 [ GTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCAGCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAGAGGTGAACTCGGGGTGATACTGGACACCCACGAAGTACGGATGGTCATCAAGCTCGATGACCTCCATCCTCTCGCCCTCGATGTCCTGACCCACAAAGCGGAAGCCCTTGTCTTCAAAGTGACTCTTG AGTTCTGGGTTCACCTCAAAGCGATGTCGGTGCCGCTCCTCCACGTACTCGGC GTCTCCGTAAAGTTTGCCCAGGATGCTGCTGGGGGACTTGAAGAACGT CCCCCTCCTTCCGAAGCCTCTGGTCCCGCCCGTCTGCCCGGGGTTGTGCTCCGGCATGTCGAATCCCAa ]
consensusID : consensus_2274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[TTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTTCAAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAAACCAGCGGCAGCCCTTCTTGAAGTAACTCTGCAACTTCCCAGCTGAAGGCAACAACAGACCCAAGTAAGGATGCCACAGTTTGATTGGCCCAGAAGTGAACTCTTGGTGGTACTGGACACCCCCCAAGTACCGATGGGCATCCAGCTTCGATTACTTCCATCTCTCCGCCCTTAATGTGCTGAACCACAAAAAGCAAAACCCTGTCCTCAAAAAGACTCTTTAGTTTCTGGGTTCACCTCAAAAGGAAGCCGGGGTCGCTCCCTCCAGAAACTCCGGGGCTACCAATAAATTTGCCCAGAAAGCTTCTTGGGGGACTTTAAAAAATTTCCCCCTCCTTCCCCAAGCTCATGGTGCCCCCCCATTTTGT]
[+] EMBL CA329788 [TTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTACATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACTCACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTTCAAGTCTGGGGTGCTGCTGCCACTCTGGTCACTGTAAGTGTCCCGTGGAAACCAGCGGCAGCCCTTCTTGAAGTAACTCTGCAACTTCCCAGCTGAAGGCAACAACAGACCCAAGTAAGGATGCCACAGTTTGATTGGCCCAGAAGTGAACTCTTGGTGGTACTGGACACCCCCCAAGTACCGATGGGCATCCAGCTTCGATTACTTCCATCTCTCCGCCCTTAATGTGCTGAACCACAAAAAGCAAAACCCTGTCCTCAAAAAGACTCTTTAGTTTCTGGGTTCACCTCAAAAGGAAGCCGGGGTCGCTCCCTCCAGAAACTCCGGGGCTACCAATAAATTTGCCCAGAAAGCTTCTTGGGGGACTTTAAAAAATTTCCCCCTCCTTCCCCAAGCTCATGGTGCCCCCCCATTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2274#0 GTTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTAC 60
consensus_2274#1 -TTGAGTTTTTATTTCTTGACATGAGTTTAAATGCTGCAAACAGTAAAATGGGTATTTAC 59
***********************************************************
consensus_2274#0 ATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACT 120
consensus_2274#1 ATATAAGGCCACAGAGGCTGGGGAACTGGCCCCAATCCCACAGGTCTGGGGCTCGTCACT 119
************************************************************
consensus_2274#0 CACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTCAGAGTCTGGGGTGCTGCTGCCAC 180
consensus_2274#1 CACTGGAGATGGACGGTAGCTTCAGCTCTGATATCTTCAAGTCTGGGGTGCTGCTGCCAC 179
************************************ *********************
consensus_2274#0 TCTGGTCACTGTAAGTGTCCCGTGGAGACAAGCGGCAGCCCTTCTGCAGGTAGCTCTGCA 240
consensus_2274#1 TCTGGTCACTGTAAGTGTCCCGTGGAAACCAGCGGCAGCCCTTCTTGAAGTAACTCTGCA 239
************************** ** *************** * *** *******
consensus_2274#0 GCTTCCCAGCTGAGGCCAGCAGCAGACCCAGGTAAGGAGGCGACGGCTTGATGGGCCGAG 300
consensus_2274#1 ACTTCCCAGCTGAAGGCAACAACAGACCCAAGTAAGGATGCCACAGTTTGATTGGCCCAG 299
************ * ** ** ******** ******* ** ** * ***** **** **
consensus_2274#0 AGGTGAACTCGGGGTGATACTGGACACCCACGAAGTACGGATGGTCATCAAGCT-CGATG 359
consensus_2274#1 AAGTGAACTCTTGGTGGTACTGGACACCCCCCAAGTACCGATGGGCATCCAGCTTCGATT 359
* ******** **** ************ * ****** ***** **** **** ****
consensus_2274#0 ACCTCCATCCTCTCGCCCTCGATGTCCTGACCCACAAAGCGGAAGCCCTTGTCTTCAAAG 419
consensus_2274#1 ACTTCCATCTCTCCGCCCTTAATGTGCTGAACCACAAAAAGCAAAACCCTGTCCTCAAAA 419
** ****** ****** **** **** ******* * ** ** **** *****
consensus_2274#0 TGACTCTTGAGTT-CTGGGTTCACCTCAAAGCGATGTCGGTGCCGCTCC-TCCACGTACT 477
consensus_2274#1 AGACTCTTTAGTTTCTGGGTTCACCTCAAAAGGAAGCCGGGGTCGCTCCCTCCAGAAACT 479
******* **** **************** ** * *** * ****** **** ***
consensus_2274#0 CGGCGTCT-CCGTAGAGTTTGCGCAGGATGCTGCT-GGGGGACTT-GAAGAGCGTCCGCC 534
consensus_2274#1 CCGGGGCTACCAATAAATTTGCCCAGAAAGCTTCTTGGGGGACTTTAAAAAATTTCCCCC 539
* * * ** ** * ***** *** * *** ** ********* ** * *** **
consensus_2274#0 TC-TTCCCGAGGCTCATGGT-CCCGCCCATCTGCCCGGGGTTGTGCTCCGGCATGTCGAT 592
consensus_2274#1 TCCTTCCCCAAGCTCATGGTGCCCCCCCATTTTGT------------------------- 574
** ***** * ********* *** ***** *
consensus_2274#0 CACCACCGGGTGCTTCGTTTCTGGGTC 619
consensus_2274#1 ---------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |