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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 689 fasta sequence
[TTTGGTTTTCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT-CTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGGTTTG]
[+] EMBL CA331198 [TTTGGTTTTCAATTACTTTATAGCTCATATTACTGGAGACATGAGGAAAAACCGTCCCATTAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGTATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATATTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGA ACGCTTGAACAGGTCCTGAATGGCTGGACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGGCTCCGGGGGGGGACGTC CAGACGGCCGT ]
[+] EMBL CA331258 [ TCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGNGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTT AAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTCTGGGATGGACAAATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT CTGGGGGGGACGTCACAGACGGGCGTCTT ]
[+] EMBL CA329300 [ TCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGGGNGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATATTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGTAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGA ATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGT ]
[+] EMBL CA329400 [ ATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTT AAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTCTGGGATGGACAAATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT CTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGGTTTG]
consensusID : consensus_2295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[GGCTGGTTCCCTTCAAGAACTTTTACTTTCTCTGCATATTTCCATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAAGCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTCATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCACAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGTGCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA]
[+] EMBL CA329599 [GGCTGGTTCCCTTCAAGAACTTTTACTTTCTCTGCATATTTCCATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAAGCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTCATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCACAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGTGCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2295#0 TTTGGTTTTCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCAT 60
consensus_2295#1 ------------------------------------------------------------
consensus_2295#0 TAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGT 120
consensus_2295#1 ------------------------------------------------------------
consensus_2295#0 TGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAA 180
consensus_2295#1 ------------------------------------------------------------
consensus_2295#0 AACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACAT 240
consensus_2295#1 ------------------------------------------------------------
consensus_2295#0 CTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGC 300
consensus_2295#1 --------------------------GGCTGGTTCCCTTCAAGA--ACTTTTACTTTCTC 32
* ** * * *** ** ** ** * *
consensus_2295#0 ATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAA 360
consensus_2295#1 TGCATATTTCC--ATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAA 90
*** * * **** ** * * ** * ** * * * *************
consensus_2295#0 GCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGT 420
consensus_2295#1 GCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGT 150
******** ***************************************************
consensus_2295#0 TGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCC 480
consensus_2295#1 TGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCC 210
************************************************************
consensus_2295#0 ATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGC 540
consensus_2295#1 ATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGC 270
************************************************************
consensus_2295#0 TCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCC 600
consensus_2295#1 TCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCC 330
****** *****************************************************
consensus_2295#0 ATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCAC 660
consensus_2295#1 ATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCAC 390
************************************************************
consensus_2295#0 TCTACAAAGTAGCTGCTGTTCTTGGTTTG------------------------------- 689
consensus_2295#1 TCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTC 450
************************ ****
consensus_2295#0 ------------------------------------------------------------
consensus_2295#1 ATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCA 510
consensus_2295#0 ------------------------------------------------------------
consensus_2295#1 CAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGT 570
consensus_2295#0 --------------------------------------------------------
consensus_2295#1 GCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA 626
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |