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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[TCTGGCCTGTCAGGACCACCGAAGGGACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAAATGCGTCATTGGATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGACCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAATGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAATTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAATGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT]
[+] EMBL CA590359 [TCTGGCCTGTCAGGACCACCGAAGGGACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAAATGCGTCATTGGATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGACCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAATGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAATTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAATGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT]
consensusID : consensus_2305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGAC]
[+] EMBL CA590668 [GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGAC]
consensusID : consensus_2305#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 429 fasta sequence
[TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGAGCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGGGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGNGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGCAACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATAGTTCCCCTCTTAAAAACAG]
[+] EMBL FR0063915 [TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGTCAACTGACAGTAACTGTAAGAGCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGCAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGGGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGTGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGCAACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATAGTTCCCCTCTTAAAAACAG]
[+] EMBL FR0061428 [ TTTTAGGCAACTGACAGTAACTGTAAGATCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGTGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGNGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATAAATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGt ]
consensusID : consensus_2305#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[GGTTTTCAGTTTGAAACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGCCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTTTTT]
[+] EMBL FR0060122 [GGTTTTCAGTTTGAAACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGCCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2305#1 GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAA 60
consensus_2305#3 ---------------------------------------------GGTTTTCAGTTTGAA 15
consensus_2305#0 ------------------------------------------------------------
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 ACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCG 120
consensus_2305#3 ACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCG 75
consensus_2305#0 ------------------------------------------------------------
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 GAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGG 180
consensus_2305#3 GAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGG---------------------- 113
consensus_2305#0 ------------------------------------------------------------
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 AGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCA 240
consensus_2305#3 ----------------CCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCA 157
consensus_2305#0 ---------------------------------------------------------TCT 3
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 GGCGGGAGAAAAACATCCAACGG--AACCTCG---GGCCCCGGTGCTATGTCTTCCCCAG 295
consensus_2305#3 GGCGGGAGAAAAACATCCAACGG--AACCTCG---GGCCCCGGTGCTATGTCTTCCCCAG 212
consensus_2305#0 GGCCTGTCAGGACCACCGAAGGG--ACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAA 61
consensus_2305#2 -TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGAGCG 59
* * * * ** * * * * ** * *
consensus_2305#1 TTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGC 355
consensus_2305#3 TTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGC 272
consensus_2305#0 AT----GCGTCATTGG-----ATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGC 112
consensus_2305#2 GAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGA-CGGGTGAGAGGA 118
** * ** **** * ** * *
consensus_2305#1 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAG--AATGCTCCA 413
consensus_2305#3 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAG--AATGCTCCA 330
consensus_2305#0 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAG--AATGCTCCA 170
consensus_2305#2 TATTAAATCCCGGAGGGAAAGCCCACGAAGG-GAGCTTAAGGATAAAAGCTAATGCTAAC 177
* * * * * ** ** * * ** ** ** ******
consensus_2305#1 TTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAA-TGGCAACCTT- 471
consensus_2305#3 TTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTT- 389
consensus_2305#0 TTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAA-TGGCAACCTT- 228
consensus_2305#2 TGAGCTAGTCTTTGCTAAACAATT-ACACGGAAACTCGNGTCACTTTATTATTCATTTTA 236
* ** ** * * ** * * ** * * * * **
consensus_2305#1 TTTGAAGGCATATTTAAGACTCTCA-GTTCTCGGTGTGAGTTGGCTGTGGATGCTGTA-- 528
consensus_2305#3 TTT--------------------------------------------------------- 392
consensus_2305#0 TTTGAAGGCATATTTAAGACTCTCA-GTTCTCGGTGTGAGTTGGCTGTGGATGCTGTA-- 285
consensus_2305#2 TTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATA 296
***
consensus_2305#1 -CACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCA-CGGAGGGAAGAC--AT 584
consensus_2305#3 ------------------------------------------------------------
consensus_2305#0 -CACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCA-CGGAGGGAAGAC--AT 341
consensus_2305#2 TCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGC 356
consensus_2305#1 CACGGACACCATGATTTTCAGCCCTTCAGAC----------------------------- 615
consensus_2305#3 ------------------------------------------------------------
consensus_2305#0 CACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGA 401
consensus_2305#2 AACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATA-GTTCC 415
consensus_2305#1 ------------------------------------------------------------
consensus_2305#3 ------------------------------------------------------------
consensus_2305#0 CCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAA 461
consensus_2305#2 CCTCTTAAAAACAG---------------------------------------------- 429
consensus_2305#1 ------------------------------------------------------------
consensus_2305#3 ------------------------------------------------------------
consensus_2305#0 TGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAA 521
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 ------------------------------------------------------------
consensus_2305#3 ------------------------------------------------------------
consensus_2305#0 TTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAA 581
consensus_2305#2 ------------------------------------------------------------
consensus_2305#1 -------------------------------------------
consensus_2305#3 -------------------------------------------
consensus_2305#0 TGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT 624
consensus_2305#2 -------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |