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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence
[CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCACAGGAAGCTCAGATATTGGCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATGCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGAAGGGGATTATTACTGTCTGGGCGAACATGGCGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCGCTTCAGCTGGAGCAGCACC]
[+] EMBL BU807888 [CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCACAGGAAGCTCAGATATTGGCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATTCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGCTCTGGTTCTCAGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGCTGGGGATTATTACTGTCTGGGTGCACATGGTGATGGAACATTCACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCGCTTCAGCTGGAGCAGCACC]
[+] EMBL FR0055184 [ ACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAAATATTAACAATGCTCTTTACTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATGCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATTACGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGAGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCG ]
consensusID : consensus_2376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 526 fasta sequence
[GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTCATAATGGACAATCAACTAGTGATTGTATGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTCATCACAGTGGGGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCAACCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG]
[+] EMBL CA330233 [GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCCGCTGTCATAATGGACAATCAACTAGTGATTGTATGTTCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTTATCACAGTGGGGACGTGTTCACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG]
[+] EMBL FR0056003 [ CGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTTATAATGGACAATCAACTAGTGATTGTTTGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTCATCACAGTGGAGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCAACCTGACCGTC ]
consensusID : consensus_2376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[AGCACTAACTCAAGAGTTGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAGATATTGACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATAAAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAGTGTGA]
[+] EMBL FR0060043 [AGCACTAACTCAAGAGTTGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAGATATTGACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATAAAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAGTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2376#0 --------CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCAT 52
consensus_2376#2 ---------------------------------------AGCACTAACTCAAGA----GT 17
consensus_2376#1 GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCA 60
* *
consensus_2376#0 CTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCT--GATAAATT--CA 108
consensus_2376#2 TGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCT--GATAAATT--CA 73
consensus_2376#1 GCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCG 120
** * ** * * ** ** * * * *** * * *
consensus_2376#0 AGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCA--CAGGAAGCTCAGATA-TTG 165
consensus_2376#2 AGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCA--CAGGAAGCTCAGATA-TTG 130
consensus_2376#1 CTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTCATAATGGACAATCAACTA 180
** * *** **** * ** * * ** * *
consensus_2376#0 GCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATG 225
consensus_2376#2 ACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATA 190
consensus_2376#1 GTGATTGTATGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGAC 240
*** * * ******* * *************** **** * ** ** **
consensus_2376#0 CTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTC 285
consensus_2376#2 AAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTC 250
consensus_2376#1 ATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCG 300
** ** * ******* * **** ** ******** * * *
consensus_2376#0 AGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGAAGGGGATTATTACTGTCTGG 345
consensus_2376#2 AGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGG 310
consensus_2376#1 ACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGA 360
* * **** * ****** *** ****** ** ********* * *********** *
consensus_2376#0 GCGAACATGGCGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGG 405
consensus_2376#2 GCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAG 370
consensus_2376#1 GTCATCACAGTGGGGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGG 420
* * ** * * * *** * ** ** ** * * *** *
consensus_2376#0 GTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCA 465
consensus_2376#2 -TGTGA------------------------------------------------------ 375
consensus_2376#1 GTGTGGTGCGTCCCAACCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCA 480
****
consensus_2376#0 GTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGA 525
consensus_2376#2 ------------------------------------------------------------
consensus_2376#1 GTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG-------------- 526
consensus_2376#0 AGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTG 585
consensus_2376#2 ------------------------------------------------------------
consensus_2376#1 ------------------------------------------------------------
consensus_2376#0 ACGGCCGCTTCAGCTGGAGCAGCACC 611
consensus_2376#2 --------------------------
consensus_2376#1 --------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |