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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCTGCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTGGGTC--TCTTCGTCGTCATTCCGGACTGG-TACGAGAG-AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCACGTTAACGGAAGCGAGCCAAGGGTTCGAGTCATGGAAGAACCCACCCCCCACCGGTTTATATGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCCTGGGCAGGGCGGGGAAGGCAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATATCTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT]
[+] EMBL BU808538 [AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCTGCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTCCCTCTTTCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAATCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCA CCCCCACCGGTTTATATGGAGTATTACTTCTTCAATGTTACCAATCC TAAGGAATTCTTGGCAGG CGGGAAGGCAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATATCTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT]
[+] EMBL FR0059025 [ TCGAACCCGAGCAGCACACATCTGGGTC TCTTCGTCGTCATTCCGGACTGG TACGAGAG AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCACGTTAACGGATGCGAGCCAAGGGTTCGAGTCTTGGAAGAACCCACCCCCCACCGTTTTATATGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCTTGGGCAGGGCGGGGAAGGCAGC ]
consensusID : consensus_2403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 505 fasta sequence
[CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC-CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC-GGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCCACCGGTTTATATGGAGAATTACTTCTTCAATGTTACCA]
[+] EMBL FR0058080 [CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATC ]
[+] EMBL FR0058257 [CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATC ]
[+] EMBL FR0059177 [ AATTTTAACCTAAAAGGGCCGGCGTATTTTAAGGGCCTTCGCTTGCGCCTCTACTCCAGCTTCGACGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTGGGGGGGGGAAACTTTAATCCTCGACTTCAGGGAAGCCGGAAAGAGAGGACCGGCATCATGACGCGGAAATCCTGGGCCATTTACGCTACCGGGCATCGCAGCGGTTCACC ]
[+] EMBL FR0059399 [ TTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACGGCGCCTCAGTCTGCTGCTCAGGACACGACGCACCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCCACCGGTTTATATGGAGAATTACTTCTTCAATGTTACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2403#0 ------------AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCT- 47
consensus_2403#1 CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTT 60
* * * * * * * * ** * * *
consensus_2403#0 --GCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTGGGTCT---------CTTCG 96
consensus_2403#1 TAACCTAAAAGT-GCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCG 119
* ** * * ** ** * * ** * ** ** * *****
consensus_2403#0 TCGTCATTCCGGACTGGT-ACGAGAG-AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACA 154
consensus_2403#1 TCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACCCCCCTCAGTCTGCTGCTCAGGACA 179
****************** ******* *********************************
consensus_2403#0 CGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTG 214
consensus_2403#1 CGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTG 239
************************************************************
consensus_2403#0 AAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAG 274
consensus_2403#1 AAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAG 299
************************************************************
consensus_2403#0 ATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGC 334
consensus_2403#1 ATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGC 359
************************************************** *********
consensus_2403#0 CCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCAC 394
consensus_2403#1 CCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCAC 419
******************************************************* ****
consensus_2403#0 GTTAACGGAAGCGAGCCAAGGGTTCGAGTCATGGAAGAACCCACCCCCCACCGGTTTATA 454
consensus_2403#1 GTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCC-ACCGGTTTATA 478
******************** *************************** ***********
consensus_2403#0 TGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCCTGGGCAGGGCGGGGAAGG 514
consensus_2403#1 TGGAGAATTACTTCTTCAATGTTACCA--------------------------------- 505
***** *************** *****
consensus_2403#0 CAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATAT 574
consensus_2403#1 ------------------------------------------------------------
consensus_2403#0 CTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT 624
consensus_2403#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |