|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GTGCGCGTCCAGGAGCCGACCATTAAAGTCCCGAGACTTAAAGGACTTTACCATCGAAAAATTAACGAGCACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTGGACAGATGGCAACTGCCCACGCCCAAAGACGATGGCGACCAGCATAAGCACATTGAGAATGAAATTGTGCCCAGTAATGGTCGAGGCAGCAGGATATACGACAGCCAACGTCCTGAGGAGGTGACTTCAGAGAATCTGTGGGAGCGGACAGAGGTGTTGGCAGCTGTAATAGCCTGTGGAGTAGTTGGTTTCCTTTGTGCCGTTTTCCTCCTCCTCCTCCTGGCCTACCGCATGAAGAAGAAGGATGAAGGCAGTTATGACCTGGGAGACACCAAACTTTCCAATGCACAGTATCACAAAGCCCCCACCAAGGAGTTCTATGCCTAACCTGAATAATAAGGGCTTTAAAAATTGAAAATGTCCTACCAATACATGGTTCAGGGTTTGCAAAGAGAGGTCATAAGGGATCCAATTAATTTATCAAAAAACATTCCCATCAGACTATTCTAGTTTCTTCCTAGAGTATCACCAGGGATCAGGAAATGTCATCTTTT]
[+] EMBL CA591250 [GTGCGCGTCCAGGAGCCGACCATTAAAGTCCCGAGACTTAAAGGACTTTACCATCGAAAAATTAACGAGCACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTGGACAGATGGCAACTGCCCACGCCCAAAGACGATGGCGACCAGCATAAGCACATTGAGAATGAAATTGTGCCCAGTAATGGTCGAGGCAGCAGGATATACGACAGCCAACGTCCTGAGGAGGTGACTTCAGAGAATCTGTGGGAGCGGACAGAGGTGTTGGCAGCTGTAATAGCCTGTGGAGTAGTTGGTTTCCTTTGTGCCGTTTTCCTCCTCCTCCTCCTGGCCTACCGCATGAAGAAGAAGGATGAAGGCAGTTATGACCTGGGAGACACCAAACTTTCCAATGCACAGTATCACAAAGCCCCCACCAAGGAGTTCTATGCCTAACCTGAATAATAAGGGCTTTAAAAATTGAAAATGTCCTACCAATACATGGTTCAGGGTTTGCAAAGAGAGGTCATAAGGGATCCAATTAATTTATCAAAAAACATTCCCATCAGACTATTCTAGTTTCTTCCTAGAGTATCACCAGGGATCAGGAAATGTCATCTTTT]
consensusID : consensus_2405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 620 fasta sequence
[AGTCCCGAGACTTAAAGGACTTTACCATCGAAAAATTAACGAGGACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATC-TGGAGACTATGCGTTTACAGACTGGATGAATCAAAAAGAGGAATTTGTGAAGTTGCGCAACATGTCGAGCACCGTTTCCAGTGAAGTGGTTCCTGAATTAAAACCAACGACCGCAGGTTTCCCTGACAACCCACAATCCACAGCAGCAGACAGCCAGCATCTATCAACTACACCAAAGGAATCGGACAACAAAAATGAGGAGGTGGCGACTGTTGACCCAGCAGCTGACAGGTTTGTTAGAACTAGTCCCAGCAGCCCGCCTCCCGCTGAAACCACCAGATTCAGCACCGAC]
[+] EMBL BU808505 [AGTCCCGAGACTTAAAGGACTTTACCATCGAAAAATTAACGAGGACTAAGCGCTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATC TGGAGACTATGCGTTTACAGACTGGATGAATCAAAAAGAGGAATTTGTGAAGTTGCGCAACATGTCGAGCACCGTTTCCAGTGAAGTGGTTCCTGAATTAAAACCAACGACCGCAGGTTTCCCTGACAACCCACAATCCACAGCAGCAGACAGCCAGCATCTATCAACTACACCAAAGGAATCGGACAACAAAAATGAGGAGGTGGCGACTGTTGACCCAGCAGCTGACAGGTTTGTTAGAACTAGTCCCAGCAGCCCGCCTCCCGCTGAAACCACCAGATTCAGCACCGAC]
[+] EMBL CA589053 [AGTCCCGAGACTTAAAGGACTTTACCATCGAAAAATTAACGAGGACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATC TGGAGACTATGCGTTTACAGACTGGATGAATCAAAAAGAGGAATTTGTGAAGTTGCGCAACATGTCGAGCACCGTTTCCAGTGAAGTGGTTCCTGAATTAAAACCAACGACCGCAGGTTTCCCTGACAACCCACAATCCACAGCAGCAGACAGCCAGCATCTATCAACTACACCAAAGGAATCGGACAACAAAAATGAGGAGGTGGCGACTGTTGACCCAGCAGCTGACAGGTTTGTTAGAACTAGTCCCAGC ]
[+] EMBL FR0058278 [ ACCATCGAAAAATTAACGAGGACTATTCGTTTCGGTTTGGAAAAAAGGCGGGTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATC TGGAGACTATGCGATTACAGACTGGATGAATCAAAAAGAGGAATTTGTGAAGGTGCGCAACATGTCGAGC ]
[+] EMBL FR0058462 [ CCATCGAAAAATTAACGAGGACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATC TGGAGACTATGCGTTTACAGACTGGATGAATCAAAAAGAGGAA TTGTGAAGTTGCGCAACATGTCGAGCACCGTTTTCAGTGAAGTGGGTCCTGAATTAAAAa ]
[+] EMBL FR0058921 [ GGCTTGGAAAAAAGGCGTCTTTAGGTACACCCAGCTCGACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGCTTCTTTTGAAGTTGAAATGAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGACTTCGTGGCTGAAACTGTCTCTGCACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCAGGCAACTTCCCTGGTGATGATGAAGACGGGGAAGACGATCGTTCAGGCTCTGGATCTTGGAGACTATGCCGTTACAGACTGGTTGAAc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2405#0 GTGCGCGTCCAGGAGCCGACCATTAAAGTCCCGAGACTTAAAGGACTTTACCATCGAAAA 60
consensus_2405#1 --------------------------AGTCCCGAGACTTAAAGGACTTTACCATCGAAAA 34
**********************************
consensus_2405#0 ATTAACGAGCACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCG 120
consensus_2405#1 ATTAACGAGGACTAAGCGTTTCGGTTTGGAAAAAAGGCGTCTTTAGTTACACCCAGCTCG 94
********* **************************************************
consensus_2405#0 ACTTATTTTGTTCAAGTGGACAGATG-GCAACTGCCCACGCCCAAAGACGATGGCGACCA 179
consensus_2405#1 ACTTATTTTGTTCAAGTAGACAGATTCGCCATAATTTGCGGTTTCTTTTGAAGTTGAAAT 154
***************** ******* ** * ** ** * **
consensus_2405#0 GCATAAGCAC--ATTGAGAATGAAATTGTGCCCAGTAATGGTCGAGGCAGCAGGATATAC 237
consensus_2405#1 GAAGAATCTTCGGCTGTTGTTTCTCGTGGGGCTCGCGACGGTCTTCGTGGCTGAAACTGT 214
* * ** * ** * ** * * * * **** * ** * * *
consensus_2405#0 GACAGCCAACGTCCTGAGGAGGTGACTTCAGAGAATCTGTGGG-AGCGGACAGAGGTGTT 296
consensus_2405#1 CTCTGC--ACGGTCCCCCAGCCTCACGACAGATGATCTGTACCTGGAGGGCAGAACTTCA 272
* ** *** * * ** **** ****** * ** **** *
consensus_2405#0 GGCAGCT---------GTAAT--AGCCTGTGGAGTAGTTGGTTTCCTTTGTGCCGTTTTC 345
consensus_2405#1 GGCAACTTCCCTGTGGATGATGAAGACGGTGAAGACGATGGTTCAGGCTCTGGATCTGGA 332
**** ** * ** ** * *** ** * ***** * ** *
consensus_2405#0 CTCC-TCCTCCTCCTGGCCTACCGCATGAAGAAGAAGGATGAAGGCAGTTATG--ACCTG 402
consensus_2405#1 GACTATGCGTTTACAGACTGGATGAATCAAAAAGAGGAATTTGTGAAGTTGCGCAACATG 392
* * * * * * * * ** ** **** * ** * **** * ** **
consensus_2405#0 GGAGACACCAAACTTTCCAATGCACAGTATCAC------AAAGCCCCCACCAAGGAGTTC 456
consensus_2405#1 TCGAGCACCG---TTTCCAGTGAAGTGGTTCCTGAATTAAAACCAACGACCGCAGGTTTC 449
**** ****** ** * * ** *** * * *** * ***
consensus_2405#0 TATGCCTAACCTGAATAATAAGGGCTTTAAAAATTGAAAATGTCCTACCAATACATGGTT 516
consensus_2405#1 CCTGACAACCCACAAT--CCACAGCAGCAGACAGCCAGCATCTATCAACTACACCAAA-- 505
** * * ** *** * ** * * * * ** * * * * **
consensus_2405#0 CAGGGTTTGCAAAGAGAGGTCATAAGGGATCCA--ATTAATTTATCAAAAAACATTCCCA 574
consensus_2405#1 -GGAATCGGACAACAAAAATGAGGAGGTGGCGACTGTTGACCCAGCAGCTGACAGGTTTG 564
* * * ** * * * * *** * * ** * * ** ***
consensus_2405#0 TCAGACTATTCTAGTTTCTTCCTAGAGTATCAC-CAGGGATCAGGAAATGTCATCTTTT- 632
consensus_2405#1 TTAGAA----CTAGTCCCAGCAGCCCGCCTCCCGCTGAAACCACCAGAT-TCAGCACCGA 619
* *** ***** * * * ** * * * * ** * ** *** *
consensus_2405#0 -
consensus_2405#1 C 620
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |