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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 790 fasta sequence
[CATAGTCCCCAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTGTCCTCAGAAGGCTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCACCAAAGCCATTCAGCCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACCGAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTCAAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAAAAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC]
[+] EMBL CA591227 [CATAGTTCCCAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTG CTTCTGACGGCTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGCAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGG ]
[+] EMBL CA846239 [ TAGTCCTTAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTGTCCTCAGAAGACTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTTCAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCACCAAAGCCATTCAGCCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACCGAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTCAAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAAAAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC]
consensusID : consensus_2431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 647 fasta sequence
[TTCCGAACGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA-TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC]
[+] EMBL FR0058302 [TTCCGAACGGACTTAACGATCTTCCAGCTAAACAGGACGGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAATTTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGCGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGACGCCTTGACCCCAGCTATTTGTGACAAAACCATTCCCTATGAAGGGGAGAACTTTCACTTGGGG ]
[+] EMBL BU808189 [ CGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC]
[+] EMBL BU806401 [ CGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTAT ]
[+] EMBL CA589409 [ AGCTAAACAGGACCGGTAG AAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2431#0 ---------------------------------------CATAGTCCCCAGGAGCTCTCC 21
consensus_2431#1 TTCCGAACGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGT 60
** * ****
consensus_2431#0 GACCTCCTC--CTGTACCCTCCCCGGTGTCCTCAGAAGGCTCCTGTGACATCTGCTTCAC 79
consensus_2431#1 CGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAA 120
** ** *** * * * *** *** * ** * * ***
consensus_2431#0 CTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGC 139
consensus_2431#1 TTC-TCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAG 179
** * * ** ** * * ** * **** * ******
consensus_2431#0 TGTCTTCTTGAGCA--TCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGG 197
consensus_2431#1 AAAGTCATGGAATTGCCCCCTCCAAACATCCTGGAC--GGCGACGACGACACCAACAAGG 237
* * ** **** ** * *** * * ** *************
consensus_2431#0 AAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCT 257
consensus_2431#1 AAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCT 297
************************************************************
consensus_2431#0 TGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGT 317
consensus_2431#1 TGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGT 357
************************************************************
consensus_2431#0 ACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGC 377
consensus_2431#1 ACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGC 417
************************************************************
consensus_2431#0 CCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGG 437
consensus_2431#1 CCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGG 477
************************************************************
consensus_2431#0 TGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCA 497
consensus_2431#1 TGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCA 537
************ ******************************************* **
consensus_2431#0 GCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCA 557
consensus_2431#1 GCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGAC-A 596
********************************************************** *
consensus_2431#0 CCAAAGCCATTCAG-CCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACC 616
consensus_2431#1 CCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC--------- 647
*** **** **** ************ *** ** ************
consensus_2431#0 GAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTC 676
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 AAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAA 736
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 AAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC 790
consensus_2431#1 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |