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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 653 fasta sequence
[ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACCGG]
[+] EMBL BU805607 [ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTG ]
[+] EMBL CA333343 [ CGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGCCTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCTCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCC ]
[+] EMBL CA590096 [ CCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGATATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACCGG]
consensusID : consensus_2440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CGTGAAGTTTGACGAAAGGGGGGAACCAAAAAAAAATCAATAAAAAATTTAACCGAGTCAGAATTCGCAGGGCTGCAGGTATGGACAGCGCCATCACTCTGTGGCAGTTCCTGCTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGGAAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGTTCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGATGGGCCTGGCGTCAG]
[+] EMBL FR0063041 [CGTGAAGTTTGACGAAAGGGGGGAACCAAAAAAAAATCAATAAAAAATTTAACCGAGTCAGAATTCGCAGGGCTGCAGGTATGGACAGCGCCATCACTCTGTGGCAGTTCCTGCTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGGAAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGTTCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGATGGGCCTGGCGTCAG]
consensusID : consensus_2440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[TAAAACGCAAACATACAGTCCGAGCGGGAGAGACAAGACGCGCCGCCGACATAACATCGCCCCTGCCTGGAGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG]
[+] EMBL FR0059612 [TAAAACGCAAACATACAGTCCGAGCGGGAGAGACAAGACGCGCCGCCGACATAACATCGCCCCTGCCTGGAGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG]
consensusID : consensus_2440#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAGAGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGGAGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC]
[+] EMBL FR0060620 [AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAGAGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGGAGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2440#0 ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGG 60
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 ------------------------------------------------------------
consensus_2440#1 ------------------------------------------------------------
consensus_2440#0 CAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCG 120
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 ------------------------------------------------------------
consensus_2440#1 ------------------------------------------------------------
consensus_2440#0 TAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAG 180
consensus_2440#3 --------------------AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAG 40
consensus_2440#2 -------------------TAAAACGCAAACATACAGT-CCGAGCGG-GAGAGACAAGAC 39
consensus_2440#1 ------------------------CGTGAAGTTTGA----CGAAAGGGGGGAACCAAAAA 32
** ** * * *** ** * ** * * *
consensus_2440#0 AGCGGCGGCCGTCCGACAGAGGGATCGCCCC-TGCCTGGTGGCC-TCCTCCCATCATGGA 238
consensus_2440#3 AGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGG 100
consensus_2440#2 -GCGCCG-----CCGACATAAC-ATCGCCCC-TGCCTGGAGGCC-TCCTCCCATCATGGA 90
consensus_2440#1 AAAATCAA----TAAAAAATTTAACCGAGTCAGAATTCGCAGGG---CTGCAGGTATGGA 85
* * * * ** * * * * ** * ****
consensus_2440#0 GAG---CTCCATCA-CACT-CTGGCAG--TTCCTGTTGCAGCTGCTGCTCGACCAGAGCC 291
consensus_2440#3 AGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCC 160
consensus_2440#2 GAG---CTCCATCA-CACT-CTGGCAG--TTCCTGTTGCAGCTGCTGCTCGACCAGAGCC 143
consensus_2440#1 CAG---CGCCATCA-CTCT-GTGGCAG--TTCCTGCTGCAGCTGCTGCTCGACCAGAGCC 138
* * ****** * ** ****** * * ** ************************
consensus_2440#0 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAG 351
consensus_2440#3 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC--------------- 205
consensus_2440#2 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAG 203
consensus_2440#1 ACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGG 198
********** **************** ***** **********
consensus_2440#0 AGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 411
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 AGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 263
consensus_2440#1 AAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 258
consensus_2440#0 GCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGT 471
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 GCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG----------------------- 300
consensus_2440#1 GCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGT 318
consensus_2440#0 TTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGT 531
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 ------------------------------------------------------------
consensus_2440#1 TCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGA 378
consensus_2440#0 CGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGA 591
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 ------------------------------------------------------------
consensus_2440#1 TGGGCCTGGCGTCAG--------------------------------------------- 393
consensus_2440#0 CCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACC 651
consensus_2440#3 ------------------------------------------------------------
consensus_2440#2 ------------------------------------------------------------
consensus_2440#1 ------------------------------------------------------------
consensus_2440#0 GG 653
consensus_2440#3 --
consensus_2440#2 --
consensus_2440#1 --
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |