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Takifugu rubripes
cluster # 2490 cluster # 2490       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2490#0 length = 560 sequences # 5  
 consensus_2490#1 length = 552 sequences # 2  
consensusID : consensus_2490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 560
fasta sequence 
                              [AGGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAA]

[+] EMBL CA340948             [ GGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGA                                                                                                                                    ]
[+] EMBL FR0057804            [    GAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGNGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTNTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCT                                                   ]
[+] EMBL CA341116             [aattcgGCACGAGCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAA]
[+] EMBL FR0057797            [                                            TCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATTTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTT                             ]
[+] EMBL CA341123             [                                                            GCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTTTTTTCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATG            ]




>consensus_2490#0
AGGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCA
GCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTG
GCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGG
GAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCA
GCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACT
TCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTA
TGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAA
ACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAG
AAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACT
GTGAGATGGAAATAAAGTAA

consensusID : consensus_2490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 552
fasta sequence 
                              [TGCATAAGGCTGAAACAATAAACAGGAAAATGCCAAAAAAAAAAAATGAAAAAAAAAAAAAAAAAAAAATGAACCGATGAAACATACTGCAGGATGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAAGAAGGAGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAAATTGAAACA]

[+] EMBL FR0057803            [TGCATAAGGCTGAAACAATAAACAGGAAAATGCCAAAAAAAAAAAATGAAAAAAAAAAAAAAAAAAAAATGAACCGATGAAACATACTGCAGGATGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTTAG                                                                                                                         ]
[+] EMBL CA340949             [                                                                                                                                                                                                                                                                                                                                   GCACGAGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAAATTGAAACA]




>consensus_2490#1
TGCATAAGGCTGAAACAATAAACAGGAAAATGCCAAAAAAAAAAAATGAAAAAAAAAAAA
AAAAAAAAATGAACCGATGAAACATACTGCAGGATGGAGAGTGGCCTTTTCATGGTCTAT
GAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAAC
CAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCG
CACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCAC
GAGCTCACGGATGACTGTGAGAAGAAGGAGGAACGTTTCCGTATGTCCGACTGCCAGTCC
TGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATG
CTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCC
AGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAG
TAAATTGAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2490#0      AGGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAG--GGCCGATCCTATGAAACCAG 58
consensus_2490#1      ---------------TGCATAAGG-CTGAAACAATAAACAGGAAAATGCCAAAAAAAAAA 44
                                     *  *  *** * * ***    *   **   ** * *  ***  * 

consensus_2490#0      CAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAAC-TCCTGCAGGGTGGAGA 117
consensus_2490#1      AATGAAAAAAAAAAAAAAAA----AAAAATGAACCGATGAAACATACTGCAGGATGGAGA 100
                       *   *      * *    *      *  *** *** ** *** * ******* ******

consensus_2490#0      GTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGC 177
consensus_2490#1      GTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGC 160
                      ************************************************************

consensus_2490#0      GGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGT 237
consensus_2490#1      GGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGT 220
                      ************************************************************

consensus_2490#0      CCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGA 297
consensus_2490#1      CCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGA 280
                      ************************************************************

consensus_2490#0      ACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCC 357
consensus_2490#1      ACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAAGAAGGAGGAACGTTTCC 340
                      ******************************************* * *  ***********

consensus_2490#0      GTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGC 417
consensus_2490#1      GTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGC 400
                      ************************************************************

consensus_2490#0      CAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACC 477
consensus_2490#1      CAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACC 460
                      ************************************************************

consensus_2490#0      TAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAA 537
consensus_2490#1      TAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAA 520
                      ************************************************************

consensus_2490#0      ACTGTGAGATGGAAATAAAGTAA--------- 560
consensus_2490#1      ACTGTGAGATGGAAATAAAGTAAATTGAAACA 552
                      ***********************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)