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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1727 fasta sequence
[GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGCTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG-TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAACCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACGCTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCATGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCTTGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCTTCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTTCCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATCGTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTCTTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT]
[+] EMBL CA590168 [GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGTTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTCTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCA ]
[+] EMBL BU805620 [ CTGTTTACGCCACCGTACTTTCCTCCTTCAGGTTCGTTGCTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTGTTTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCT ]
[+] EMBL FR0060150 [ CCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTGGGCTTCTAGGTGTTTTAATTCACGAACATGCCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGGGTTCTTGAGCCTCGGCTACAAAGTGAAGGGGCACAACGACCAGACAGTGAATCA ]
[+] EMBL FR0060860 [ TTTGGGTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACGTGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGA ]
[+] EMBL AY102865 [ TTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAAGCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAACCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACGCTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCATGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCTTGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCTTCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTTCCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATCGTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTCTTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT]
[+] EMBL FR0059269 [ GATGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGGG ]
consensusID : consensus_2494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[CCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT]
[-] EMBL CA332141 [CCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2494#0 GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGCTCTGCCGGCTT 60
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGA 120
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 ACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCG 180
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 GACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACA 240
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 GCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGA 300
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 ACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACG 360
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 CGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGA 420
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 ATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTT 480
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTGTTTTTTGGTACCGATGGCTCTG 540
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAA 600
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 AGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAA 660
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 CCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACG 720
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 CTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCA 780
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCT 840
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCT 900
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTT 960
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 CCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATC 1020
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 GTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTC 1080
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 TTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTC 1140
consensus_2494#1 -------------------------------------------CCTCTGCAGGGAAACTC 17
*****************
consensus_2494#0 CTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGA 1200
consensus_2494#1 CTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGA 77
************************************************************
consensus_2494#0 ATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTG 1260
consensus_2494#1 ATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTG 137
************************************************************
consensus_2494#0 TTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATA 1320
consensus_2494#1 TTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATA 197
************************************************************
consensus_2494#0 CTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGC 1380
consensus_2494#1 CTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGC 257
************************************************************
consensus_2494#0 TGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGA 1440
consensus_2494#1 TGTCGTCTGTCAGTAGCTTGTGTGC---------------------------AGTTTTGA 290
************************* ********
consensus_2494#0 GTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCG 1500
consensus_2494#1 GTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCG 350
************************************************************
consensus_2494#0 TAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATA 1560
consensus_2494#1 TAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATA 410
************************************************************
consensus_2494#0 AGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGA 1620
consensus_2494#1 AGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGA 470
************************************************************
consensus_2494#0 TGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTA 1680
consensus_2494#1 TGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTA 530
************************************************************
consensus_2494#0 TTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT 1727
consensus_2494#1 TTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT---- 573
*******************************************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |