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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC]
[+] EMBL CA330904 [CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC]
consensusID : consensus_2499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 327 fasta sequence
[GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA]
[+] EMBL CA330100 [GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAn ]
[+] EMBL CA333649 [ CAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAa ]
[+] EMBL CA330060 [ CAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCC ]
[+] EMBL CA333601 [ GTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTC ]
[+] EMBL CA340939 [ AGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCT ]
[+] EMBL CA330913 [ AACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2499#0 CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGG 60
consensus_2499#1 ------------------------------------------------------------
consensus_2499#0 CGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGA 120
consensus_2499#1 -----------------------------------------GCACCGACAGTACTCCAGA 19
** * ** *** **
consensus_2499#0 CTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGT 180
consensus_2499#1 TCTGGAGAAAA--------TCTGCACGTTCCATTC----CTGTCAACAGAAGAG-CTAGT 66
** ** ** ****** * * * ***** * * ***** * ***
consensus_2499#0 CCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACA-CGCTGTGGTGA 239
consensus_2499#1 GGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCA 126
** * * *** * * * ** *** * ** * * * *
consensus_2499#0 CGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTG 299
consensus_2499#1 CTTTTGCCAAAACTTGCTTTAA--GCATTTTGTTACTGATTGTAGAGCTGATTAAAAC-A 183
* * ** * * ** * * * * * *** * *** * ****
consensus_2499#0 GGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCC 359
consensus_2499#1 GCTCCAAACCCACAAATC---------AACTGTTCCAGGCTGATTCCGGAGCCA--CTTC 232
* ***** ** ** *********** * ** ** *** * ** *
consensus_2499#0 TCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAA-AG 418
consensus_2499#1 TCAACAATGTTGTTAC-ATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAA 291
** *** * *** * *** * * *** ** ** ** * *** *
consensus_2499#0 TTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACT 478
consensus_2499#1 AACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA------------------------ 327
***** * * * * *** **
consensus_2499#0 CCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC 526
consensus_2499#1 ------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |