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Takifugu rubripes
cluster # 2500 cluster # 2500       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2500#0 length = 596 sequences # 5  
 consensus_2500#1 length = 541 sequences # 2  
consensusID : consensus_2500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 596
fasta sequence 
                              [GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGACAAGTAGGAAAAAGCACGGGCTGAGGGATTCCAATACTGTATAATTACGGGTTTATACA]

[+] EMBL BU805825             [GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAGTTGTAATGGAGCTTCACGCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTATGGGGAGAAGTTCGCTGATGAAAACTTCAAGTTGAAACATGTTACAGCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCGCAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTCGGCAATGTTGTGGAGGGATTGGATGTTGTCAAGAAGATGGAGGCAAAGGGCTCAAAAAGTGGCAAAACCACCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGACCTATAGCACAAAGCACGGGCTGAGGGATTCCAATACTGTATAATTACGGGTTTATACA]
[+] EMBL CA844697             [                TCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGG                                                                                                                       ]
[+] EMBL CA844450             [                TCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGAC CCTCGATTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGATTAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTG                                                                                                                        ]
[+] EMBL FR0057448            [                  AATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGG                                                                                                                          ]
[+] EMBL FR0057963            [                       TCAAAAAGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTTCACCCCTGACAAGTCTGAATAAGCctc                                         ]




>consensus_2500#0
GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGC
GTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAA
GACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTC
CATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAA
TGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAA
ACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACA
GTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAG
TGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAA
AACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGACAA
GTAGGAAAAAGCACGGGCTGAGGGATTCCAATACTGTATAATTACGGGTTTATACA

consensusID : consensus_2500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence 
                              [CGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACATGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT]

[+] EMBL FR0057079            [CGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACATGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT]
[+] EMBL CA844514             [             ACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGAAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCCGT                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_2500#1
CGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTT
CGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAG
GGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGT
GGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCT
GATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGT
CCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGG
AAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAA
AAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTG
TAACTGTCCACCCCTGGACATGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2500#0      GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGC 60
consensus_2500#1      ----------------------------------------CGCGTTTTCTTTGACATCGC 20
                                                              ********************

consensus_2500#0      GTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAA 120
consensus_2500#1      GTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAA 80
                      ************************************************************

consensus_2500#0      GACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTC 180
consensus_2500#1      GACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTC 140
                      ************************************************************

consensus_2500#0      CATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAA 240
consensus_2500#1      CATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAA 200
                      ************************************************************

consensus_2500#0      TGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAA 300
consensus_2500#1      TGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAA 260
                      ************************************************************

consensus_2500#0      ACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACA 360
consensus_2500#1      ACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACA 320
                      ************************************************************

consensus_2500#0      GTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAG 420
consensus_2500#1      GTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAG 380
                      ************************************************************

consensus_2500#0      TGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAA 480
consensus_2500#1      TGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAA 440
                      ************************************************************

consensus_2500#0      AACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTCCACCCCTG-ACA 539
consensus_2500#1      AACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACA 500
                      ******************** *********************************** ***

consensus_2500#0      AGTAGGAAAAAGCACGGGCTGAGGGATTCCAAT-ACTGTATAATTACGGGTTTATACA 596
consensus_2500#1      TGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT----------------- 541
                       **  *** * **      * *    *** *** **** **


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)