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Takifugu rubripes
cluster # 2511 cluster # 2511       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2511#0 length = 644 sequences # 6  
 consensus_2511#1 length = 350 sequences # 1  
consensusID : consensus_2511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 644
fasta sequence 
                              [AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC--TTTCTGACAGTGTTGGAAACTTCATGTATACTGTTAGTCA]

[+] EMBL CA590965             [AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCGGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC  TTTCTGACAGTGTTGGAA                      ]
[+] EMBL CA589696             [   CCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACACGTATGATGAACAGGTTCCTCACTTCATGTATACTGTTAGTCA]
[+] EMBL CA590830             [   CCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGTGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGGGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC  TTTCTGACAGTGTTG                         ]
[+] EMBL FR0059708            [                                                   TTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGNTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGGCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGGAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGGGACCATTGACAGGGACCc                                                                                                                                                                                                                                        ]
[+] EMBL FR0059385            [                                                       GTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTNTGAGTCTGANAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGGGTTGGAGACCATTGACAGGGACCTGA                                                                                                                                                                                                                                      ]
[+] EMBL FR0060067            [                                                                                                                                                                CTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGGCAGTAACACCCACTGCCATGCTGACCACATCACC                                                                                                                                                               ]




>consensus_2511#0
AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGA
TAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAG
AGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAG
CTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGA
CCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTT
CTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGA
GACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCT
CATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCA
CATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAA
ATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAA
ACACTTTCTGACAGTGTTGGAAACTTCATGTATACTGTTAGTCA

consensusID : consensus_2511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence 
                              [AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGACCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAAGTAGGTTTATGCATTTCTACAATGTTGTGGGGGGTTTTTGTTATACGGTGAAAGAAAAGCAGCAACTTTTAGCCAGTTAGCTGGCAACGTTAGCAGGAAGTGTTACCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATACGTGCTGGNTCTGGTCCCCTGCAGGCTACTGTTGGCACTACTGTGTTACAATCTACATTCTCCTATTACACC]

[+] EMBL FR0059784            [AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGACCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAAGTAGGTTTATGCATTTCTACAATGTTGTGGGGGGTTTTTGTTATACGGTGAAAGAAAAGCAGCAACTTTTAGCCAGTTAGCTGGCAACGTTAGCAGGAAGTGTTACCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATACGTGCTGGNTCTGGTCCCCTGCAGGCTACTGTTGGCACTACTGTGTTACAATCTACATTCTCCTATTACACC]




>consensus_2511#1
AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGACCCG
CTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTT
AGACAAGTAGGTTTATGCATTTCTACAATGTTGTGGGGGGTTTTTGTTATACGGTGAAAG
AAAAGCAGCAACTTTTAGCCAGTTAGCTGGCAACGTTAGCAGGAAGTGTTACCCAGCGGC
TGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATACGTGCTGGNTCTGGTCCCCTGC
AGGCTACTGTTGGCACTACTGTGTTACAATCTACATTCTCCTATTACACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2511#0      AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGA 60
consensus_2511#1      ------------------------------------------------------------
                                                                                  

consensus_2511#0      TAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAG 120
consensus_2511#1      ------------------------------------------------------------
                                                                                  

consensus_2511#0      AGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAG 180
consensus_2511#1      ------------------------------------------------------------
                                                                                  

consensus_2511#0      CTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGA 240
consensus_2511#1      ----AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGA 56
                          ******* * ***** ********* ***********  ****** **  ******

consensus_2511#0      CCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTT 300
consensus_2511#1      CCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTT 116
                      ******* ****************************************************

consensus_2511#0      CTTTAGACAATT--GTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTA 358
consensus_2511#1      CTTTAGACAAGTAGGTTTATGCATTTCTACAATGT-TGTGGGGGGTTTTTGTTATACGGT 175
                      ********** *  ****  *  *     **     *         *  **  * * *  

consensus_2511#0      GAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAG 418
consensus_2511#1      GAAAGAAAAGCAGCAACTTTTAGCCAGTTAG--CTGGCAAC-GTTAGCAGGAAG-TGTTA 231
                      ** *  * ** ***     * * * *    *  ****  **  **  **** *  **   

consensus_2511#0      CTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGAC 478
consensus_2511#1      CCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATAC----GTGCTGGN 287
                      * **          *  *     * **       *  *  * *   **     *****  

consensus_2511#0      CACA-TCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTC 537
consensus_2511#1      TCTGGTCCCCTGCA---GGCTACTGTTGGCACTACTG----TGTTACAATCTACATTCTC 340
                           ** ** ***   ** *  **  * **   ***     * *  *     *  ****

consensus_2511#0      CAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGG 597
consensus_2511#1      CTATTACACC-------------------------------------------------- 350
                      * * * ** *                                                  

consensus_2511#0      GAAACACTTTCTGACAGTGTTGGAAACTTCATGTATACTGTTAGTCA 644
consensus_2511#1      -----------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)