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Takifugu rubripes
cluster # 2529 cluster # 2529       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2529#0 length = 579 sequences # 5  
 consensus_2529#1 length = 360 sequences # 2  
consensusID : consensus_2529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 579
fasta sequence 
                              [CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC--AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA]

[+] EMBL BU808059             [CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC  AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAG       ]
[+] EMBL CA591684             [  CTTGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC  AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA]
[+] EMBL FR0059478            [                                                                    GAGAGGCCGATTCGATTCGGATTTACCCTC  ACCTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACTAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCTGGCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATTCTCCAGGAGCAGATCAAAGAGCTGGCG                                                                                                                                                                   ]
[+] EMBL FR0060702            [                                                                                    TCGGATTTACCCTCGGGCGTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGGGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAA                                                                                                                                                                                                                                   ]
[+] EMBL FR0059463            [                                                                                                                CCCGTCGCAGGGGTGGCGAGAACTTTAATCCAAGCCCGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAA AACCTTGGCAGGCCTGAACAGTTGGAGA                                                                                             ]




>consensus_2529#0
CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCA
TCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTCAACTGTTAACAACCCGTCGCAA
ACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCG
CCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCT
CGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTA
GCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGA
TGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGA
AGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGC
TGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGG
GGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA

consensusID : consensus_2529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 360
fasta sequence 
                              [GAGTGCATTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTGGGCGTGCGGGGCGCTCCATTGTTCACACACGCACACACACACACACACACACACGGCACACACACACACACACAGCGCTACAC]

[+] EMBL FR0059604            [GAGTGCATTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTTGGCGTGCCGGGCt                                                                      ]
[+] EMBL FR0059662            [              CAGAGAGACCGAACCGATTCGGA TTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTGTGCGTGCGGGCTGCTCCATTGTTCACACACGCACACACACACACACACACACACGGCACACACACACACACACAGCGCTACAC]




>consensus_2529#1
GAGTGCATTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAAC
CCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAG
AGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCT
CTTTCTTCTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAGGTAAA
CATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTGGGCGTGCGGGGCGCTCCATTGTT
CACACACGCACACACACACACACACACACACGGCACACACACACACACACAGCGCTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2529#0      CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCA 60
consensus_2529#1      -----------------------------------------------------GAGTGCA 7
                                                                           *******

consensus_2529#0      TCG-ACGCAGAGAGACCGAACCGATTCGGAT-TTACCCTCAACTGTTAACAACCCGTCGC 118
consensus_2529#1      TTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGC 67
                      *   *********************  ***  ****************************

consensus_2529#0      AAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTT 178
consensus_2529#1      AAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTT 127
                      ************************************************************

consensus_2529#0      CGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTT 238
consensus_2529#1      CGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTT 187
                      ************************************************************

consensus_2529#0      CTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGC 298
consensus_2529#1      CTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAG-GTAAACATCCG 246
                      ***** ***************** ************************ *          

consensus_2529#0      TAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCA-ATGGATCTCGTCAAGAACCACT 357
consensus_2529#1      TTGTGGATCGAGCTTTCGGAAC--GTTTGGGTGGGCGTGCGGGGCGCTCCATTGTTCACA 304
                      * * *    *  * **   ***  * ***    ***    **  * *  **     *** 

consensus_2529#0      TGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGG 417
consensus_2529#1      C-ACGCACAC-ACACACACACACACACACGGCACACACACACACA-CACAGCGCTACAC- 360
                        * * ** *    * *    *     *   *    *    ** * ** ** ***     

consensus_2529#0      AGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAAC 477
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      AGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCC 537
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      AGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA 579
consensus_2529#1      ------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)