cluster # 2533

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Takifugu rubripes
cluster # 2533 cluster # 2533 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2533#0 length = 589 sequences # 3

consensus_2533#1 length = 508 sequences # 3
consensus_2533#2 length = 348 sequences # 1

consensusID : consensus_2533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 589
fasta sequence

                              [AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA]

[+] EMBL BU808202             [AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA]
[+] EMBL BU805906             [  AAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA]
[+] EMBL FR0061554            [                                         TTGACAACAACGGCATTTTCGTTCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGCATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGCGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGGGCTACTACACAAGGATGAG                                                                                                                                                                                                                                             ]




>consensus_2533#0
AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTT
CGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGAT
AAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATG
TTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAG
TCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGG
GCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAAC
CGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCT
GAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGA
GATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTT
TGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA

consensusID : consensus_2533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 508
fasta sequence

                              [AGAGCAAAGAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCGGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCACTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGCTCTCTTGGAGTATGCT]

[+] EMBL BU806408             [AGAGCAAAGAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCGTCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCAC TTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGCTCTCTTGGAGTATGCT]
[+] EMBL CA590188             [        GAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGG                                                                                                                                                                                                                                                              ]
[+] EMBL FR0061355            [                                   CGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCTGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCACTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCT                                          ]




>consensus_2533#1
AGAGCAAAGAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACC
TCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACT
ATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGC
ACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCC
CTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTT
CTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGG
ATACTCCGCTTTCAAAGCCGGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTA
AGGAGCAACGCACTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGA
GAGTTTCGCTGCTCTCTTGGAGTATGCT

consensusID : consensus_2533#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [CTACAGACGATTTTGAATAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGCCCGTGATCGAGCAGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACCCGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCTCAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTTGAGCCCCGTCGCTCCGAGTGGAAGATCTGCAC]

[+] EMBL FR0056801            [CTACAGACGATTTTGAATAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGCCCGTGATCGAGCAGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACCCGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCTCAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTTGAGCCCCGTCGCTCCGAGTGGAAGATCTGCAC]




>consensus_2533#2
CTACAGACGATTTTGAATAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCC
ATGCCCGTGATCGAGCAGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCC
CGCTGTTGCAGTAACCCGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACC
CCTGAAGATCCCAGGTGGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCT
ATTCTATTCTGATTCTCAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGT
GCGGTTCTTGCACTTTGAGCCCCGTCGCTCCGAGTGGAAGATCTGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2533#1      --------------------------------------------AGAGCAAAGAGAAGTC 16
consensus_2533#2      ------------------------------------------------------------
consensus_2533#0      AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTT 60
                                                                                  

consensus_2533#1      CGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAA 76
consensus_2533#2      -------------------------------------------CTACAGACGATTTTGAA 17
consensus_2533#0      CGTCCAAAGT-TCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGA 119
                                                                  *  **    *  *  *

consensus_2533#1      CAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAAC-AGCAGTACTATACTAACATGGCGG 135
consensus_2533#2      TAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGC-CCGTGATCGAGC 76
consensus_2533#0      TAAGAATTGCATTAATTGTCAGTAAACACCCGAAA-ATCCGTTTTTCCCTGAAGCTAGAA 178
                       *   ****  *     *  *  **       *   * * *   *   *           

consensus_2533#1      ATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCC 195
consensus_2533#2      AGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACC 136
consensus_2533#0      TGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTC 238
                        *  *  *                                     * *    *     *

consensus_2533#1      GAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGT 255
consensus_2533#2      CGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGT 196
consensus_2533#0      AGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGT 298
                           ******************************** *****  *********** ***

consensus_2533#1      GGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGA 315
consensus_2533#2      GGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCT 256
consensus_2533#0      GGGCGAGGGA-CAGTCA--GGGATCAC--TCCCTCGGC-GTGCTACTACACAAGGATGAG 352
                      **********         ****** *       * **   ***  *       ***   

consensus_2533#1      AAGTTGACTGTAACAGAAGAACC---TGCAGGGAATGGTCGCCCAGGGATACTCCGCTTT 372
consensus_2533#2      CAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTT 316
consensus_2533#0      AAACTAACCGTGACACAGGCCAC---TCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTC 409
                       *  *    *      * *   *   * * *  *  **  *        *  * * *** 

consensus_2533#1      CAAAGCCGGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCA 432
consensus_2533#2      GAGCCCCGTCGCTCCGAGTGGAAGATC-TGCAC--------------------------- 348
consensus_2533#0      CACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATA-G 468
                       *   **  *    *  *                                          

consensus_2533#1      CTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGC 492
consensus_2533#2      ------------------------------------------------------------
consensus_2533#0      CCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGC 528
                                                                                  

consensus_2533#1      TCTCTTGGAGTATGCT-------------------------------------------- 508
consensus_2533#2      ------------------------------------------------------------
consensus_2533#0      TCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAA 588
                                                                                  

consensus_2533#1      -
consensus_2533#2      -
consensus_2533#0      A 589

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)