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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 599 fasta sequence
[ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGGGCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGGGCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAACAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCGAAGCATACGGAGCCAACAAGACCGACATGGTCCAGACCGCGGATCTTCTGGACGACGACGAAACTGGCCCGCGGCCAAAGACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCGCAC]
[+] EMBL CA333159 [ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGGGCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGGGCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCAAACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCCTTCAACAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCTCAGCATACGGAGCCCACCAGACCGACCTGGTTCCGACCCCGGATCTTCTGGACGACGACGAAACTGGCCCGCGGCCAAAGACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCGCAC]
[+] EMBL FR0060484 [ CGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGGTCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGTACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCT ]
[+] EMBL CA332890 [ CCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCTGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGC ]
[+] EMBL FR0060057 [ CTGAGCCGGCAGGGGGAGGATAAGATCGACAGCAAGTACGACCCATAACTGGAGCAGATTCTGGTGGGGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAG ]
consensusID : consensus_2536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence
[ACAGTCTGAGCAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACGTGGGTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGGAGTCGGCATGGCAAACAAAGGGCCGTCCTACGGGCTGAGCCGGGAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCGATGTTGGGACGGCCAGAACCTGGGAAATTAGGGTTCCAGGCCTGGGTGAGGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCTTTGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGGCACGTAT]
[+] EMBL BU807522 [ACAGTCTGAGCAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACAT CCTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGGAGTCGGCATGGCAAACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCTGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATG TGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCTTTGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGGCACGTAT]
[+] EMBL FR0060550 [ ATTCATAGGGCCAACCAGAGGAATCACGTGGGTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGTAGTCGGCATGGCAAACAAAGGGCCGTCCTACGGGCTGAGCCGGGATGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGTGCAGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCCATGTTGGGCTGGCCAGAACCTGGGAAATTAGGGTTCCAGGCCTGGGTGAGGGAT ]
consensusID : consensus_2536#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[GAGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGCACGTATCAAGGGTACCCCAACTGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCCGGCAAGAACGTGATCGGCCTGCAGATGGTCTCCAACAAAGGAGCCAGCCAGGAGGGCATGAGCTACGGAAGACCCCGGCAGATCATGTAGAACGGCTGCACCCCAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAACCCGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC]
[+] EMBL FR0062769 [GAGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGCACGTATCAAGGGTACCCCAACTGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCCGGCAAGAACGTGATCGGCCTGCAGATGGTCTCCAACAAAGGAGCCAGCCAGGAGGGCATGAGCTACGGAAGACCCCGGCAGATCATGTAGAACGGCTGCACCCCAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAACCCGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2536#0 ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGG 60
consensus_2536#1 ACAGTCTGAG--CAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACGTGG 58
consensus_2536#2 ------------------------------------------------------------
consensus_2536#0 GCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGG 120
consensus_2536#1 GT----GTGACCGTTAACCATCT--GAACCCTCC-----TCAGGAACAGGAAGTTGAGGT 107
consensus_2536#2 ------------------------------------------------------------
consensus_2536#0 GCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCT 180
consensus_2536#1 GACCTAACTTCAAGATGGCAGCAAA---GGGAGTCGGCATGGCAAACAAAGGGCCGTCCT 164
consensus_2536#2 -------------------------------------------GAGCAGAGGACCCTGTC 17
** *** ** *
consensus_2536#0 ACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGC 240
consensus_2536#1 ACGGGCTGAGCCGGGAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGC 224
consensus_2536#2 G-GCCCTGGGGAGCTTGGCTGTCACCAAGGACGA-AGCACGTATCAAG-GGTACCCCAAC 74
* *** * * ** * *** *** **** *** * * ** * *
consensus_2536#0 AGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGT-GGGACGGCCAGAACCT 299
consensus_2536#1 AGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCGATGTTGGGACGGCCAGAACCT 284
consensus_2536#2 TGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCC 134
* ** * * * * ** ** * * * * ** * *
consensus_2536#0 GGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAAC 359
consensus_2536#1 GGGAAATTAGGGTTCCAGGCCTGGGTGAGGGATGGATGCATTCTGTGCCAGCTGGTGAAC 344
consensus_2536#2 GGCAAG--AACGTGATCGGCCTGC-----AGATGGTCTCCAACAAAGG-AGCCAGCCAGG 186
** ** * ** ****** ***** * * * *** * *
consensus_2536#0 AGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAA 419
consensus_2536#1 AGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAA 404
consensus_2536#2 AGGGCATGAGCTACGGAAGACCCCG-GCAGATCATGTAGAAC--GGCTGCACCC------ 237
** * * * *** * **** * *** ** * *** * **
consensus_2536#0 CAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCGA-AGCATACGGAGCCAACAAGAC 478
consensus_2536#1 CAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGA-AGCATACGGAGTCAACAAGAC 463
consensus_2536#2 CAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAAC-C 296
*** * ** * ** * ** *** *** ** ** *** ** *
consensus_2536#0 CGACATGGTCCAG-ACCGCGGATCTTCTGGACGACGACGAAACTGGCC-CGCGGCCAAAG 536
consensus_2536#1 CGACATGTTCCAG-ACCGTGGATCTT-TGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGG 521
consensus_2536#2 CGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC------------------------ 332
** ** *** ** * *** *
consensus_2536#0 ACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCG 596
consensus_2536#1 ACCCTGTCGGCCCTGGGG--AGCTTGGCTGTCACCAAGGACGAAGGCACGTAT------- 572
consensus_2536#2 ------------------------------------------------------------
consensus_2536#0 CAC 599
consensus_2536#1 ---
consensus_2536#2 ---
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |