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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 621 fasta sequence
[AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGCTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG-TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC]
[+] EMBL BU807175 [AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGT ]
[+] EMBL CA330705 [ CACCTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCTTATATTCTCATGCGCCATCATCGACCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGATGCGATTTCTAATTATTCTTTCAGGTTTATCAATTATCAATTTTTGCAAGAAAAAAGAAACTTTCGAGAAACTGATATTTTTCAAGATATATATTTTTATTTCAATATTTGGGTATAATAATCGTCAAAAATTCATTGAGGAGAAATGGTTTCATATATAAAA ]
[+] EMBL FR0056520 [ AGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGCATGCAGGGATGTTGGAATCTGTTGCGATTTCCAATTATTCTTTCAGTTTTA ]
[+] EMBL FR0055973 [ AGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGTAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGTACATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCATGTTTTGCTGTCGATGCTGTCCTGGAATGCATGGATG TGGAATCTGTTGCGATTTCTAATTAGTCTTTCAGTTTTATCAGTTATCAGTTTTTGCACGActtctg ]
[-] EMBL CA588688 [ GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC]
[+] EMBL CA330412 [ TAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGAaaa ]
consensusID : consensus_2573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence
[GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCAACTATATACAAGCGGAGTCCTAAACGCTGCAGGTTTTGCTGTAATTGCTGCCCTGGAATGCGGGGATGTGGTGCCTGCTGCGGGTTCTGATCACTCCCGATGTCACCAACTATAACACGAGATTATTATTTGTAAACTTGAAAGTAATGAGTGACACTGTGGTTTTCAATATCTGATGTTCCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC]
[+] EMBL CA589455 [GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGACGATGCCTTATACCAAC ATATACAAGCGTCGTCCTCAACGTTGCAGGTTTTGCTGTAATTGCTGCCCTGGAATACAGGGATGTGGTCCCTGCTGCGGGTTCTGATCACTCCCGATGTCACCAACTATAACCCTCGATTTTTATTTGTAAACTTGAAAGTATTGAGTGACACTGTGGTTTTCAATATCTGATGTTTCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC]
[+] EMBL CA330895 [ TCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAAATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGCAGATGCCGTATACCAACTTTATTTTTGCGGAGTCCTAAACGCTGCAAGTTTTGCTGTAATTGCTGTCCTGGAATGCGGGGATGTGGTGTCTGCTGCAGGTTCTGATCACTCCTGATGTCACCAACTATAACACGAGATTATTTTTTGTCAACTTGAAAGTAATAATTGACACTGTGATTTTCAATATCTGATGTTCCTTCTGTACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGATCCAAATAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2573#0 AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGCTGGAG 60
consensus_2573#1 --GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAG 58
**************************************************** *****
consensus_2573#0 CAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTG 120
consensus_2573#1 CAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTG 118
************************************************************
consensus_2573#0 GCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAG 180
consensus_2573#1 GCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAG 178
********************************************* **************
consensus_2573#0 GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGG 240
consensus_2573#1 GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGG 238
************************************************************
consensus_2573#0 AAGATGCCGTATACCCAC-ATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCG 299
consensus_2573#1 AAGATGCCGTATACCAACTATATACAAGCGGAGTCCTAAACGCTGCAGGTTTTGCTGTAA 298
*************** ** ** * * * ***** *******************
consensus_2573#0 ATGCTGTCCTGGAATGCAGGGATGTGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTT 359
consensus_2573#1 TTGCTGCCCTGGAATGCGGGGATGTGGTGCCTGCTGCGGGTTCTGATCACTCC--CGATG 356
***** ********** ********* *** **** **** ** * ** * *
consensus_2573#0 TTATCAGTTATCA------GTTTTTGCAAGAAAAAA-GAAACTTTCAAGAAAC-TGATAT 411
consensus_2573#1 TCACCAACTATAACACGAGATTATTATTTGTAAACTTGAAAGTAATGAGTGACACTGTGG 416
* * ** *** * ** ** * *** **** * ** ** *
consensus_2573#0 TTTTCAGGATAT-ATATTTTT-----ATTTCAATATTTGGCTATAATAATCATCAGTCAT 465
consensus_2573#1 TTTTCAATATCTGATGTTCCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCC-T 475
****** ** * ** ** * * ** *** ** ** * ****** * *
consensus_2573#0 TCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGA---AAATTAATTTCCATCAACTA 522
consensus_2573#1 TCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC------------ 523
*** * * ********** ** *** ***** **** **
consensus_2573#0 TTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAA 582
consensus_2573#1 ------------------------------------------------------------
consensus_2573#0 CTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC 621
consensus_2573#1 ---------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |