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Takifugu rubripes
cluster # 2577 cluster # 2577       Sequences # 8       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2577#0 length = 619 sequences # 7  
 consensus_2577#1 length = 324 sequences # 1  
consensusID : consensus_2577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 619
fasta sequence 
                              [TTTGCAAATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGGGAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGTCCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTCCTCGGGGTGTAGCCGAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTCAGACTTGCCCTTGTGGAAATCGTA]

[+] EMBL CA331041             [TTTGCAAATGGAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGGGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGGGAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGTCCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTCCTCGGGGTGTAGCCGAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTCAGACTTGCCCTTGTGGAA      ]
[-] EMBL CA847108             [    CAAATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAACAGAAGACAGGGTGTGGTGGATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA331876             [      AATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGT                                                                                                                                                                                                                  ]
[+] EMBL CA329749             [       ATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTCACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGGGAAAAGGACCACTGGACCTAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGTCCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTCCTCGGGGTGTAGCCGAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTCAGACTTGCCCTTGTGGAACTCGTA]
[+] EMBL CA331131             [       ATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTT                                                                                                                                                                                                                 ]
[+] EMBL CA331865             [        TGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTATATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGGGAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGTCCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTCCTCGGGGTGTAACCGAGGACGGCAGGTTGGTGCACTTGCAAATGTCCTCATACTCAGACTTGCCCCTGTGGGAATC   ]
[+] EMBL CA331662             [         GTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTGAACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATTTCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTGGTGGACCAAATGATGTAAAACCTTATGATTGACAATATGTTTGTGAAAATGAATCATGTCTAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAAATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCTCCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGGGAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGTCCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTCCTCGGGGTGTAGCCGAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTCAGACTTGCC               ]




>consensus_2577#0
TTTGCAAATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTG
AACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATT
TCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTG
GTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTC
TAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAA
ATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCT
CCCCAGACATGATGTATTTAGTTGCCATGGTGATGACCGGGGCTCCTGTTGGGACACCGG
GAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAGAGT
CCACGCCGTGCTTGTCAAGTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGATGTC
CTCGGGGTGTAGCCGAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTCAGACT
TGCCCTTGTGGAAATCGTA

consensusID : consensus_2577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence 
                              [GTAAGAGTTGGAAACACCGACGCTGAGGGACGGATGGTGATGGTTGACCTGCTCTGTGAGATGAAAGAGAAGGCATTGAGTGTGACTGCTCCTGAGCTCTTTACCATTGCTACTCTGACTGGTCATGCTATCAGAGCAATGGGCCCCAACTACTCCATCATTATGGATAACGGACCGGCCCATCGCAACCAAAATGCTGCTGACTGGCAAAAAGCTGGTGAGGTGTTGGGAGATGTTTTTGAGATGTCCAGAATCAGACGAGAGGACTACGAGTTCCACAAGGACAAGTCTGAGTATGAGGACATTTTGCAGTGCAAACAACCT]

[+] EMBL CA846583             [GTAAGAGTTGGAAACACCGACGCTGAGGGACGGATGGTGATGGTTGACCTGCTCTGTGAGATGAAAGAGAAGGCATTGAGTGTGACTGCTCCTGAGCTCTTTACCATTGCTACTCTGACTGGTCATGCTATCAGAGCAATGGGCCCCAACTACTCCATCATTATGGATAACGGACCGGCCCATCGCAACCAAAATGCTGCTGACTGGCAAAAAGCTGGTGAGGTGTTGGGAGATGTTTTTGAGATGTCCAGAATCAGACGAGAGGACTACGAGTTCCACAAGGACAAGTCTGAGTATGAGGACATTTTGCAGTGCAAACAACCT]




>consensus_2577#1
GTAAGAGTTGGAAACACCGACGCTGAGGGACGGATGGTGATGGTTGACCTGCTCTGTGAG
ATGAAAGAGAAGGCATTGAGTGTGACTGCTCCTGAGCTCTTTACCATTGCTACTCTGACT
GGTCATGCTATCAGAGCAATGGGCCCCAACTACTCCATCATTATGGATAACGGACCGGCC
CATCGCAACCAAAATGCTGCTGACTGGCAAAAAGCTGGTGAGGTGTTGGGAGATGTTTTT
GAGATGTCCAGAATCAGACGAGAGGACTACGAGTTCCACAAGGACAAGTCTGAGTATGAG
GACATTTTGCAGTGCAAACAACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2577#0      TTTGCAAATGTAGTTTCCTTTATTTGTCACCGAGGAGCTCGTAGTTTAAGACATACACTG 60
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      AACCATATCAGAAAGTCATTCCCATTCTGTTACACGTACATTTCAAAGATTTTTAAAATT 120
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      TCCCATTTAACCCCTGAGTATCATACTTATTCAGGCCAGTAAAGCAGAAGACAGGGTGTG 180
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      GTGGACCAAATGATGTAAAACCTTACGATTGACAATATGTTTGTGAAAATGAATCATGTC 240
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      TAACGTAACTGGAAATATGAAGGGGGAAAAAAGCTGATTTGTTAGTAGCAGGTAACCGAA 300
consensus_2577#1      -----------------GTAAGAGTTGGAAACACCGACGC-TGAGGGACGGATGGTGATG 42
                                         *** *    ***  * **    * **   * * *       

consensus_2577#0      ATTAGTTGCCACCGACCGCTGACACTAGGATGTTTATATCTGAGCGATTCATTTAGACCT 360
consensus_2577#1      GTTGACCTGCTCTGTGAGATGA-AAGAGAAGGCATTGA---GTGTGACTGCTCCTGAGCT 98
                       **      * * *   * *** *  ** * *  *  *   * * ** *  *   ** **

consensus_2577#0      CCCCAGACATGATGTATTTAGTTGCCATGGTGAT-GACCG--GGGCTCCTGTTGGGACAC 417
consensus_2577#1      CTTTACCATTGCTACTCTGACTGGTCATGCTATCAGAGCAATGGGCCCCAACT---ACTC 155
                      *   *    ** *    * * * * **** *    ** *   **** **   *   ** *

consensus_2577#0      CGGGAAAAGGACCACTGGACCCAGCGATGTCAATGTGGGAATATGGCAGTGGTGCCGTAG 477
consensus_2577#1      CATCATTATGGATAACGGACCGGCCCATCGCAACC--AAAATGCTGCTG-ACTGGCAAAA 212
                      *   *  * *   *  *****   * **  ***      ***   ** *   ** *  * 

consensus_2577#0      AGTCCACGCCGTGCTTGTCAA-GTCCTGAGGCCATGATGAGGAAAGCTGCAGGGGTCTGA 536
consensus_2577#1      AGCTGGTGAGGTGTTGGGAGATGTTTTTGAGATGTCCAGAATCAGACGAGAGGACTACGA 272
                      **     *  *** * *   * **  *   *   *   **   *  *   ***  *  **

consensus_2577#0      TGTCCTCGGGGTGTAGCC-GAGGACGGCAGGTTGTTGCACTGCAAAATGTCCTCATACTC 595
consensus_2577#1      GTTCCACAAGGACAAGTCTGAGTATGAGGACATTTTGCAGTGCAAACAACCT-------- 324
                        *** *  **   ** * *** * *      * ***** ******    *         

consensus_2577#0      AGACTTGCCCTTGTGGAAATCGTA 619
consensus_2577#1      ------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)