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Takifugu rubripes
cluster # 2584 cluster # 2584       Sequences # 8       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2584#0 length = 699 sequences # 7  
 consensus_2584#1 length = 452 sequences # 1  
consensusID : consensus_2584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 699
fasta sequence 
                              [ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA-GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC-TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT]

[+] EMBL CA333129             [ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGGTGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACAC                                                                                 ]
[+] EMBL CA591343             [                                             GCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGACGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCT                           ]
[+] EMBL FR0058904            [                                               GGACCGCCGACGCAGGTTTGGGTTTCCATTTTCATAGCGAGGGGCGNGGGGGATCGTCAACATGGAACCGGAGATGCA GTACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGGCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGGGCCACTACCAACACGGGCACATAAACTTCTACCTTAA                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA589556             [                                                                            TTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT]
[+] EMBL FR0058295            [                                                                                      AGCCTCGGGTTTTTTTGGCAACATGGTACCGGAGATGGAGGGACAAAACGTTGGAGCTGATGAACACCCCAGGAATGGAGTCGCAAAACCTCGAGGACGACCTGTCGCCTAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGTGCTCCCGTAAGCGACCGTCGCATGGAAACTATGAGAAGGAGAAGGAACACGTGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGTTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGTCACATAAACTTCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCATGGCTTG                                                                                                                                                                                                                                                            ]
[+] EMBL FR0058140            [                                                                                                                                               TGATGAACACGTCTTGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGGCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGAATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGATTTCATCACTGCGGTGCCAGCCCAAGGCTTGGACCATATAGCAGAGA                                                                                                                                                                                                                                            ]
[+] EMBL FR0060120            [                                                                                                                                                                                      ACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTT CTGGATGCTCGCTCCCTATGCTCAGCAAAACTGGTGTGTAAAGAGTGGCAGAGGGTCATCTCCGA GGGATGCTGGGGAAGA                                                                                                                                            ]




>consensus_2584#0
ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGC
AGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAG
ATGGAGGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTG
GACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGC
TCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACACTGCATCACCCTC
TTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATG
TGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTC
ATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTG
GATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCC
GAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAA
GGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTC
CCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT

consensusID : consensus_2584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence 
                              [CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNCNNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATGAGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTGGAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCCGAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGTCCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC]

[+] EMBL BU807454             [CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNCNNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATGAGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTGGAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCCGAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGTCCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC]




>consensus_2584#1
CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNCNNGGACCAGGGGNCGG
AGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATGAGCCAGTACCAGTATG
TCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTCATCACTGCGTTGCCAG
CCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTGGAGGCTTGCTCCGTAT
GCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCCGAGGGGATGCTGGGGA
AGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAAGGCCTATCCGAGAGAC
ACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGTCCACCCAACGGTTAGT
ATGGCTGACTGGATCCCAAGAAGATTCCAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2584#0      ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGC 60
consensus_2584#1      ------------------------------------------------------------
                                                                                  

consensus_2584#0      AGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAG 120
consensus_2584#1      ------------------------------------------------------------
                                                                                  

consensus_2584#0      ATGGAGGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTG 180
consensus_2584#1      ------------------------------------------------------------
                                                                                  

consensus_2584#0      GACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGC 240
consensus_2584#1      ------------------------------------------------------------
                                                                                  

consensus_2584#0      TCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACACTGCATCACCCTC 300
consensus_2584#1      ----------------CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNC 44
                                      ** ***************************** *** ***** *

consensus_2584#0      TTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATG 360
consensus_2584#1      NNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATG 104
                         ****** ** ****** ******** ******* **     *****   **** ***

consensus_2584#0      TGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTC 420
consensus_2584#1      AGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTC 164
                       **** ****** * * **** ******************* ******************

consensus_2584#0      ATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTG 480
consensus_2584#1      ATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTG 224
                      *********************** *************************** ***** **

consensus_2584#0      GATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCC 540
consensus_2584#1      GAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCC 284
                      ** *** ***** ******************************************* ***

consensus_2584#0      GAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAA 600
consensus_2584#1      GAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAA 344
                      ************ *********************************** **** ******

consensus_2584#0      GGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTC 660
consensus_2584#1      GGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGT 404
                      **************************************************** *****  

consensus_2584#0      CCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT--------- 699
consensus_2584#1      CCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC 452
                      *********  *** ***  ** **** *********


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)