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Takifugu rubripes
cluster # 2594 cluster # 2594       Sequences # 8       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2594#0 length = 491 sequences # 7  
 consensus_2594#1 length = 387 sequences # 1  
consensusID : consensus_2594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 491
fasta sequence 
                              [AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC-AGAGTTTTTCCACAGATTTTCCATAGTCAT-CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATGGCCTACATGAAACCTGGTGCTGCAAAGCACACACCAGTG]

[+] EMBL CA333145             [AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAAACTGGGCACTGTTCTGTGGAACACCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATTGCCTACATGAAACCTGGTGCTGCAAAGCACACACCAGTG]
[+] EMBL FR0060353            [    ACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTCCTGA                                                              ]
[+] EMBL FR0061190            [         ATTCCGACAGACACCTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAG                                                                                                       ]
[+] EMBL FR0061209            [              GACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCCGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTNTCCATAGTCAT CGGGGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTC                                                                                         ]
[+] EMBL FR0061131            [                            GTTGTGGGGTGACCACGGTCAGGAGTCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCCAAGAGTTTTT                                                                                                                                                              ]
[+] EMBL FR0061311            [                                     TGACCGCGGGTAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGATTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTTGTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCATCCGGTGTCCAGTTGCCTtg                                                                                                                      ]
[+] EMBL FR0061682            [                                                                                                                                  ACCTATTGCAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGGTTTTCCACAGATTTTCCATAGTCAT CGGTGTNCAGGTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGGGCGCCTCTGTACCTTTTCTGATCTGTAAAACTTACGGCCTGATGG                                      ]




>consensus_2594#0
AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGG
AGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATT
TGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAG
ACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTG
CCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCC
CAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTG
TCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTAC
CTTTCCTGATCTGAAAAACTTACGGCCTGATGGCCTACATGAAACCTGGTGCTGCAAAGC
ACACACCAGTG

consensusID : consensus_2594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence 
                              [AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTTCTGATCTGTAAAACTACGGGCTGAT]

[+] EMBL FR0061173            [AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTTCTGATCTGTAAAACTACGGGCTGAT]




>consensus_2594#1
AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGG
AATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATAC
TGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTA
CTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAGCCCAG
ACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTGTCC
AGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTT
TTCTGATCTGTAAAACTACGGGCTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2594#0      ---------AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGG 51
consensus_2594#1      AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGG 60
                               ***************************************************

consensus_2594#0      AATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATAC 111
consensus_2594#1      AATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATAC 120
                      ************************************************************

consensus_2594#0      TGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTA 171
consensus_2594#1      TGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTA 180
                      ************************************************************

consensus_2594#0      CTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAG 231
consensus_2594#1      CTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGA------ 234
                      ******************************************************      

consensus_2594#0      CACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTG 291
consensus_2594#1      ------------------------------------------------------------
                                                                                  

consensus_2594#0      AGGAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAG 351
consensus_2594#1      ------GCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAG 288
                            ******************************************************

consensus_2594#0      TCATCGGTGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCG 411
consensus_2594#1      TCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCG 348
                      ********************** *************************************

consensus_2594#0      CCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATGGCCTACATGAAACCTGGTG 471
consensus_2594#1      CCTCTGTACCTTTTCTGATCTGTAAAACT-ACGGGCTGAT-------------------- 387
                      ************* ******** ****** **** *****                    

consensus_2594#0      CTGCAAAGCACACACCAGTG 491
consensus_2594#1      --------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)