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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 697 fasta sequence
[ACTGCCTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAGAACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACAA-ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC-AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC]
[+] EMBL CA590744 [ACTGCCTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAGAACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCC ]
[+] EMBL CA590619 [ CGGTAAACTGAGCACTTTGAGGGATAGAAGAAGAGAGA GATAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC]
[+] EMBL FR0061074 [ tAAGAAGATAGAGATGGAGAACAA ATGTATCTTTCAGGCTAGGAGAATCTGCACAGGAATTTAGGATAAGACAGAGCGTAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGGGGGCACACTGGAGGTGCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGCGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGGTCGATGTGGTGCCTATCAAGCGAAC AGGAGCATTTGTGATTAACGTCAAGGGGTATATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGGTTTt ]
[+] EMBL FR0060602 [ AAGAGAGAGAGGGAGAACAAGAGGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACGCAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGGA ]
[+] EMBL FR0060610 [ GGAGAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGCAGGTCCGCAGTGGACAGACCTGCTGGACCGGCTCAGGTCCAGAGAGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATCCTGCGAACAAGGAGCATTTTGGgat ]
consensusID : consensus_2607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 650 fasta sequence
[CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC]
[+] EMBL BU807606 [CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG ]
[+] EMBL BU807459 [ GGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC]
[+] EMBL FR0060290 [ CACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTGCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGAAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCT ]
[+] EMBL FR0060130 [ GGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATGGACGGAACAAAAGGAAGACAAGAAGCGCTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGCTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGGGCATTTGTGATCAACGTCAAGGGGGACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2607#0 -------------ACTGC-CTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGG 46
consensus_2607#1 CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGG 60
* ** *****************************************
consensus_2607#0 CGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAG 106
consensus_2607#1 CGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAG 120
**************** *********************************** *******
consensus_2607#0 AACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACA 166
consensus_2607#1 AACATCGTTTACGG---------------------------------------------- 134
**************
consensus_2607#0 AATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAAC 226
consensus_2607#1 ---------------CTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAAC 179
*********************************************
consensus_2607#0 CTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTA 286
consensus_2607#1 TTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTA 239
***************************************** *****************
consensus_2607#0 ACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTG 346
consensus_2607#1 ACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTG 299
************************************************************
consensus_2607#0 GTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAG 406
consensus_2607#1 GTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAG 359
********************************************** *************
consensus_2607#0 AAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATG 466
consensus_2607#1 AAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATG 419
************************************************************
consensus_2607#0 CAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGC 526
consensus_2607#1 CAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGC 479
************************************************* ** *******
consensus_2607#0 ACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTC 586
consensus_2607#1 ACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTC 539
************************************************************
consensus_2607#0 GACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG 646
consensus_2607#1 GACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG 599
************************************************************
consensus_2607#0 GACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC 697
consensus_2607#1 GACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC 650
************************************** ***********
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |