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Takifugu rubripes
cluster # 2617 cluster # 2617       Sequences # 9       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2617#0 length = 813 sequences # 8  
 consensus_2617#1 length = 327 sequences # 1  
consensusID : consensus_2617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 813
fasta sequence 
                              [TGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA-TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA-GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCCAAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCTGTGCATGTGGTCAGAGTCCCACAACCATCTCAAGGGCATTACCAGGAACCCATACGACCTGGAGAGGATACCACGCGGAAGTTCAGGAGGGGAGGGTAGTTTATTGGCGGCTGCGGGCTCAGCCATCGGGGTCGGCTCCGACATCGGGGGGAGCATTCGCATGGCGGGTTTCTCCCATGGGATATTTGGACATAAAACCACTCCTGGTGTCCTT]

[+] EMBL CA589832             [TGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCCAAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCTGTGCATGTGGTCAGAGTCCCACAACCATCTC                                                                                                                                                                                       ]
[+] EMBL CA590720             [  GTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCCGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCCAAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCCGTGCATGTGGACAGAGTCC                                                                                                                                                                                                   ]
[+] EMBL CA588996             [              GCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTT CAAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCTGTGCATGTGGTCAGAATCCACAAACCATCTCACG                                                                                                                                                                                    ]
[+] EMBL CA588366             [                                        GCACTTGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGCCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCCAAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCTGTGCATGTGGTCAGAGTCCCACAACCATCTCCACGGCATTACCAGGAACCCATACGACCTGGAGAGGATACCACGCGGAAGTTCAGGAGGGGAGGGTAGTTTATTGGCGGCTGCGGGCTCAGCCATCGGGGTCGGCTCCGACATCGGGGGGAGCATTCGCATGGCGGGTTTCTCCCATGGGATATTTGGACATAAAACCACTCCTGGTGTCCTT]
[+] EMBL BU808222             [                                                                          ACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCCGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGTTACTCAGTTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGATTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCTGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGCCTGTCAAAAGGTCCTATGCCTTCCAAGGGATGCCC                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL FR0059565            [                                                                          ACCGAGCGGCCTCGAAGGAGGTCTGGCGACGCTCTTCTGGGCTGTCAGTTGGACTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGTAAGACCGCAGCGCCGGCGGTGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACCCAGCTGCGGAAGAAGATCCGCCGAAGACAGTTGCTGAGTGTGGAGGTGGCCCAGCCTTATATCGACAGGGATCCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL FR0060787            [                                                                                   TCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGTGAATCTCCCGTCTGTCCGGAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGT CAGGCTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL FR0060457            [                                                                                            GGTTCTGGCGTCGCTCTTCTGGGCTCCCA TTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAGATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA GGATCCAAGACGTCAACCCGCTTATTAACGCCGGCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAGGCCGCGCAAGGCGACAGGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_2617#0
TGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCG
GCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTGGGCTGTC
ATTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCCGGCGGCG
AAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGCGAAGAAG
ATCCGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACAGGATCCAA
GACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCCTCCAGGAG
GCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGCTGGAGGAC
CGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCCAAGGCATG
CCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACGCTCCACCT
TTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCAGTGAGCTG
TGCATGTGGTCAGAGTCCCACAACCATCTCAAGGGCATTACCAGGAACCCATACGACCTG
GAGAGGATACCACGCGGAAGTTCAGGAGGGGAGGGTAGTTTATTGGCGGCTGCGGGCTCA
GCCATCGGGGTCGGCTCCGACATCGGGGGGAGCATTCGCATGGCGGGTTTCTCCCATGGG
ATATTTGGACATAAAACCACTCCTGGTGTCCTT

consensusID : consensus_2617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence 
                              [CTTTTAATGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGTTCTTCTGGGCTGTCATTGGGCTCCTCTTCGCGGNCTTCCGGGNGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACNCAGCTGTTTTTTTTTTTTTCGGCGAANACAGGCGCNGACTGCCGGAGCGTTTTTTTTTCTCCCCCCCCCCCGCGGGCGCGCGGGCCCCTCTTCTC]

[+] EMBL CA332905             [CTTTTAATGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCTCTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGTTCTTCTGGGCTGTCATTGGGCTCCTCTTCGCGGNCTTCCGGGNGCTGTCGCGGAAGACCGCAGCGCCGGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACNCAGCTGTTTTTTTTTTTTTCGGCGAANACAGGCGCNGACTGCCGGAGCGTTTTTTTTTCTCCCCCCCCCCCGCGGGCGCGCGGGCCCCTCTTCTC]




>consensus_2617#1
CTTTTAATGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCT
CTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGTTCTTCTG
GGCTGTCATTGGGCTCCTCTTCGCGGNCTTCCGGGNGCTGTCGCGGAAGACCGCAGCGCC
GGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACNCAGCTGTT
TTTTTTTTTTTCGGCGAANACAGGCGCNGACTGCCGGAGCGTTTTTTTTTCTCCCCCCCC
CCCGCGGGCGCGCGGGCCCCTCTTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2617#0      -------TGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCT 53
consensus_2617#1      CTTTTAATGGTCGCGTGCGCAGCAGATCATTTAAGCTAGCACCGGCCGGACTCGGCTCCT 60
                             *****************************************************

consensus_2617#0      CTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGCTCTTCTG 113
consensus_2617#1      CTCTGCGGCGGCAACGATGGCACCGAGCGGTCTCGAAAAGGTTCTGGCGTCGTTCTTCTG 120
                      **************************************************** *******

consensus_2617#0      GGCTGTCATTGGGCTCCTCTTCGCGGTCTTCCGGGTGCTGTCGCGGAAGACCGCAGCGCC 173
consensus_2617#1      GGCTGTCATTGGGCTCCTCTTCGCGGNCTTCCGGGNGCTGTCGCGGAAGACCGCAGCGCC 180
                      ************************** ******** ************************

consensus_2617#0      GGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACGCAGCTGGC 233
consensus_2617#1      GGCGGCGAAGCTCCCGTCTGTCCGTAACCCGCTGCTGCTCGTCTCAGCGACNCAGCTGTT 240
                      *************************************************** ******  

consensus_2617#0      GAAGAAGATC-CGGCGAAGAGAGGTGCTGAGTGTGGAGGTGGTGCAGGCTTATATCGACA 292
consensus_2617#1      TTTTTTTTTTTCGGCGAANACAGGCGCNGACTGCCGGAGCGTTTTTTTTTCTCCCCCCCC 300
                              *  ******* * *** ** ** **  *  * * *      *     *  * 

consensus_2617#0      GGATCCAAGACGTCAACCCGCTTATTAACGCCGTCACAAAAGACAGGTTTGACGCTGCCC 352
consensus_2617#1      CCCGCGGGCGCGCGGGCCCCTCTTCTC--------------------------------- 327
                          *     **    ***   *  *                                  

consensus_2617#0      TCCAGGAGGCCGCGCAGGTCGACAGGTTAATCGAGGAGGAAACCGGAGGAGAGGAGGTGC 412
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      TGGAGGACCGGCTGCCTTTACTGGGAGTTCCGCTGTCTGTCAAAAGCTCCTATGCCTTCC 472
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      AAGGCATGCCCTTCACCTCTGGTCTGTGCTCCAGGCGTGGCGTCATCGCCTCGGTTGACG 532
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      CTCCACCTTTGACCCTGCTGAAGAGAGCGGGGGCCGTCCCACTGGGCACCACCAATACCA 592
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      GTGAGCTGTGCATGTGGTCAGAGTCCCACAACCATCTCAAGGGCATTACCAGGAACCCAT 652
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      ACGACCTGGAGAGGATACCACGCGGAAGTTCAGGAGGGGAGGGTAGTTTATTGGCGGCTG 712
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      CGGGCTCAGCCATCGGGGTCGGCTCCGACATCGGGGGGAGCATTCGCATGGCGGGTTTCT 772
consensus_2617#1      ------------------------------------------------------------
                                                                                  

consensus_2617#0      CCCATGGGATATTTGGACATAAAACCACTCCTGGTGTCCTT 813
consensus_2617#1      -----------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)