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Takifugu rubripes
cluster # 2646 cluster # 2646       Sequences # 10       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2646#0 length = 642 sequences # 7  
 consensus_2646#1 length = 632 sequences # 3  
consensusID : consensus_2646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 642
fasta sequence 
                              [CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT-GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGGTCGGAGCAGCATCC]

[+] EMBL BU806908             [CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGAT   GATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGAC                                                                                                                                                                                 ]
[+] EMBL BU806100             [               AGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTC                     ]
[+] EMBL BU806276             [                  CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGG              ]
[+] EMBL BU804624             [                   CGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGGTCGGAGCAGCATCC]
[+] EMBL FR0063536            [                                      AAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGT                                                                                                                     ]
[+] EMBL FR0060332            [                                                  ACTTATAT GGGAAAAAGTAGCGGGGACGCCTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAAACCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCAC                                                                                                                                                                                                                    ]
[+] EMBL FR0063136            [                                                     TATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAGGAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCANACCCGACAAACCTCCTGTTGCCCCACCAAA                                                                                                                                                                                                                                                                                                       ]




>consensus_2646#0
CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGG
GAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCT
GCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACA
TTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCC
AAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCT
CTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGAT
GACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCT
GTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGAT
GTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGG
CACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGG
ATTATCAGCGCTATCGGAGTCGCTGTGGTCGGAGCAGCATCC

consensusID : consensus_2646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 632
fasta sequence 
                              [CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGGGGCAGCCAACATGAAGTTTCCTCTGGAGGCTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA-TGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATT-ACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAATCCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT]

[+] EMBL CA591370             [CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA TGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATT ACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAATCCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT]
[+] EMBL FR0059671            [                                                                                GTAGACGAGAATTTTGCAAAGGGGCATCCAACATTATATTTCCTCTGCACCCTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA TGCTCTTGGGCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA                                                                                                                                                                                                                                                                                                   ]
[+] EMBL FR0061277            [                                                                                                                                                                                                                                                                          TAAACTTGGAGGAGGGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCATACCTGTTTGATGTGGGTAAAGGGGATTAACAAACCTGAGGGAGGGCGATCAGGGG                                                                                                                              ]




>consensus_2646#1
CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGAC
GCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGGGGCAGCCAACATGAAGTT
TCCTCTGGAGGCTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGA
CTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCC
CAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAA
ACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTT
GGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACC
AGGAGGAGCTGGGGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTA
CAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGG
TGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAATCCTGAAGATGCTAAATGC
TAACATGCCAGAGGAGTTGTTTTTGTGGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2646#0      CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGG 60
consensus_2646#1      ------------------CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGG 42
                                        ******************************************

consensus_2646#0      G-AAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGC 119
consensus_2646#1      GGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGG 102
                      * ********************************************************* 

consensus_2646#0      TGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGAC 179
consensus_2646#1      GGCAGCCAACATGAAGTTTCCTCTGGAGGCTCTTTCACTGCTTTTACTTGTCGCTGGGAC 162
                       **************************** ******************************

consensus_2646#0      ATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCC 239
consensus_2646#1      ATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCC 222
                      ************************************************************

consensus_2646#0      CAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGC 299
consensus_2646#1      CAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGC 282
                      ************************************************************

consensus_2646#0      TCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA 359
consensus_2646#1      TCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA 342
                      ************************************************************

consensus_2646#0      TGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCC 419
consensus_2646#1      TGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCC 402
                      ************************************************************

consensus_2646#0      TGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGA 479
consensus_2646#1      TGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCAGACCTGTTTGA 462
                      ****************************** ********** ******************

consensus_2646#0      TGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGG 539
consensus_2646#1      TGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGG 522
                      ************************************************************

consensus_2646#0      GCACGATACTCAAGGTGGTGCCGATCAACCTCAAGA-----AGCTTCAGCTGGACCTATT 594
consensus_2646#1      GCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAAT 582
                      ************************************     * **** *  ** ** * *

consensus_2646#0      GCTGG-GATTATCAGCGCTA-----TCGGAGTCGCTGTGGTCGGAGCAGCATCC 642
consensus_2646#1      CCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT---- 632
                       ***  ***  * *  ****      * ***  * ***  * *  *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)