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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 709 fasta sequence
[CCAGGAGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCC-TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC-GATTACATCCTGGGTCTGAAGGTTGAAGATTTC-TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG-TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCTCCATATGGGGGTGGGAGCCCAGGTCGCGTCAAGAGAAAGAACGCCAAGAAGGGCCAGGGTGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAAAAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG]
[+] EMBL FR0062544 [CCAGGAGTTGTNTTTGCAGCATTACCTATGTCACCCCCCGCCGACCC TTGGAGAAATCCCGTCTCGACCAGNAGTTGAACCTCATTGTCCAATATGTGCTGAGGAACAAGCGTGAGGTGTGGAGGCTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGCCTGGTGAGAATCGGCGTGTTGCATGAGGGTAAGATGAACCTC GATTACATCCCTGGTCTGAAGGGTGAAGATTTCTTTGGAGCGGAGGCTGCAGACACc ]
[+] EMBL FR0055454 [ AGGAGATGAGTTTGCAGCAAGACCTATGTCACCCCCAGCCGAGTC TTCGAGAAATCACGTCTCGACCAGGAGTTGATGCTCATTGGCGAATATGGCCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGATCACCCTGGACAAAATTCGCAACGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGTCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGG ]
[+] EMBL FR0055593 [ AGTTGATTTTGCAGCAAGACCTATGTCACCCCCCGCCGAGCC TTCAAGAAATCCCGTCTCGACCAGGAGTTGATGATCATTGGCGAATATGGCCTGAGGAACAAGCGCGAGGTGTGGAGGGTCAAGATCACCCTGGCCAGAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATCAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGTCTTGCTAACAGTATCCACCATGCCCGTGTCCTTATCCGCCAGATGCACATTCGCGTGCGCATGCAGC GTGTGCATATCCCCTCCCTTGAGGTTCATCTGCTCAGCCAGAAGCACATTGACTT ]
[+] EMBL FR0055718 [ AGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCGCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG TGGGGA ]
[+] EMBL FR0055200 [ GGTTTGCAGCAAGACCTATGTCACCCCCCGCCGTCCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCTCCATATGGGGGTGGGAGCCCAAGTCGC ]
[+] EMBL FR0056024 [ AAGACCTATGTCACCCCCCGCCGTCCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGGATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTA CCACCATGCCGGTGTCCTTAACCG CATAGGCACATTCCCGTG GGAAGCAGGTTGGTGAA ]
[+] EMBL FR0056059 [ CCCCCCGCCGTCCCATTCTAGAAATCCCGTCTCGACCACGAGTTGAGGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCACGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGCTGAGGGTAAGATGAAc ]
[+] EMBL CA845748 [ TC TTGGAGCGGAGGCTGCAGACACAGGTCTTCACGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGTGTGCGCAAGCAGG TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTG AGATCTCCATATGGTGGTGGACGCCCAGGTCGCGTCAAGAGAAAGAACGCCAAGAAGGGCCAGGGTGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAc ]
[+] EMBL FR0056288 [ AGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAAAAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG]
consensusID : consensus_2655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAGATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAGGATCAACTTCTCATGCTGTCCACTGAGATCAGTTAAAACATCTCAGCAAGGTCAATTCGGTATCAAAACCGTATACCTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGACTATGCCAATGAAGGCTGTGGTGTC]
[+] EMBL FR0056613 [CTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAGATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAGGATCAACTTCTCATGCTGTCCACTGAGATCAGTTAAAACATCTCAGCAAGGTCAATTCGGTATCAAAACCGTATACCTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGACTATGCCAATGAAGGCTGTGGTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2655#0 CCAGGAGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCCTTCGAGAAATCCC 60
consensus_2655#1 ------------------------------------------------------------
consensus_2655#0 GTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGT 120
consensus_2655#1 ------------------------------------------------------------
consensus_2655#0 GGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGG 180
consensus_2655#1 ------------------------------------CTGCCAGAGAGCTGCTGACTCTGG 24
************************
consensus_2655#0 ATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAA 240
consensus_2655#1 ATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAA 84
************************************************************
consensus_2655#0 TCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAG 300
consensus_2655#1 TCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAG 144
************************************************************
consensus_2655#0 ATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCC 360
consensus_2655#1 ATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCC 204
************************************************************
consensus_2655#0 ACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGGTGGTGAATA 420
consensus_2655#1 ACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAG-----GATCAACTTCT---CA 256
************************************* * * ** * * *
consensus_2655#0 TCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCT 480
consensus_2655#1 TGCTGTCCACTGAGATCAGTTAAAACATCTC--AGCAAGGTCAATTCGGTATCAAAA--- 311
* * *** ** * * ** *** * **** * * *** * * ** *
consensus_2655#0 CCATATGGGGGTGGGAGCCCAGGTCGCGTCAAGAGAAAGAACG-CCAAGAAGGGCCAGGG 539
consensus_2655#1 CCGTATAC---CTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGA 368
** *** * ** * * ***** * ** *** ***** **
consensus_2655#0 TGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGT 599
consensus_2655#1 CTATGCCAATGAAGGCTGTGGTGTC----------------------------------- 393
* * ** * **
consensus_2655#0 TTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAA 659
consensus_2655#1 ------------------------------------------------------------
consensus_2655#0 AAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG 709
consensus_2655#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |