|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 832 fasta sequence
[GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGATAAGACCCAAAAGGCAGAGACTTGCACCACTGTCGGGAGCAACAGTCCGTCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGGCGCTGCGGGCTGAAGATCAGCAGCACCACTCCATCTGAGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGATCCCATTGTGGAGCCCGAGATCCTC-CCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAGAAGGTGTAGGCTGCGGAGCACTAAGCTCTGCCAGACCACCACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT]
[+] EMBL CA340970 [GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGATAAGACCCAAAAGGCAGAGACTTGCACCACTGTCGGGAGCAACAGTCCGTCTGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGG ]
[+] EMBL FR0061458 [ AGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGGTTGCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGGCTGGACG ]
[+] EMBL FR0063051 [ ACAGATTACGGCGTTCCCTTTTCCAAGCTGATCATTTACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGGCGCTGCGTGCTGAAGATCAGCAGCACCACTCCATCTGAGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGTTCCCATTGTGGAGCCCGAGATCCTC CCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAAAAGGTGTAG ]
[+] EMBL FR0063001 [ TTGCACGCAGTACAAGAAAGAGGGAGCAGACTTCGCCGAGTGGCTCTGCTGGCTGAAAATCAACAACACCACTCCATCTGAGCTGGCCATCTTGCTGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGATCCCATTGTGCAGCCCGAGATCCTCTCCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAGAAGGTGTTAGCTGCGGAGCACTAAGCTCTGCCAGACCACCACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT]
consensusID : consensus_2661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 467 fasta sequence
[CAGACTGAACCAGGAGGCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC-TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA-CAGCTGTATCGGCGGAGTCATC-TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC-GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCT]
[+] EMBL FR0062432 [CAGACTGAACCAGGAGGCACCTACGCATCCTCGACACCTAACAAACCTGCTCTGTACGCTCCCAGAGAACCGTTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGANACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCC ]
[+] EMBL FR0062352 [ ACCAGGAGGCACCTACGCATCCTCGACACCTAACAAACCTGCTCTGTACGCTCCCAGAGAACCGTTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGGGGCTCCAGGAAAAGGCATCCTTGCTTGCTGATGAGTCCACCCGCAGCATGGCCAAACGCTTCACCCCCATCGGGGGTGAG ]
[+] EMBL BU807655 [ aCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCT]
[+] EMBL BU806179 [ aCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGTGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAG ]
[+] EMBL FR0062273 [ CGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACCAGCTGTATCGGCGGAGTCATCTTTTTTCCACGAAACGCTGGACCAGAAAACAGAT ]
[+] EMBL FR0062988 [ ATTAGCAGCCGCGGTGACTCACCAGTGCCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGNTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGGGTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGGGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACT ]
[+] EMBL FR0059554 [ ATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGACCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGTGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGGCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2661#0 GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGAT 60
consensus_2661#1 -------------------------------CAGACTGAACCAGG---AGGCACCTACGC 26
* * * * * **** *
consensus_2661#0 AAGACCCAAAAGGCAGAGACTTGCACC--ACTGTCGGGAGCAACAGTCCGTCAGCCACCA 118
consensus_2661#1 ATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAG-CAGCCACCA 85
* * * * * * * ** *** * ** ** *** * * *********
consensus_2661#0 TGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTC 178
consensus_2661#1 TGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTC 145
************************************ ***********************
consensus_2661#0 AAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGG 238
consensus_2661#1 AAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGG 205
************************************************************
consensus_2661#0 CCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCC 298
consensus_2661#1 CCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCC 265
************************************************************
consensus_2661#0 AGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCC 358
consensus_2661#1 AGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCC 325
************************************************************
consensus_2661#0 ACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACC 418
consensus_2661#1 ACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACC 385
************************************************************
consensus_2661#0 GTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACG 478
consensus_2661#1 GTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACG 445
************************************************************
consensus_2661#0 GAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAG 538
consensus_2661#1 GAGAGACAACCACTCAAGGTCT-------------------------------------- 467
**********************
consensus_2661#0 ACGGAGCAGACTTCGCCAAGTGGCGCTGCGGGCTGAAGATCAGCAGCACCACTCCATCTG 598
consensus_2661#1 ------------------------------------------------------------
consensus_2661#0 AGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGA 658
consensus_2661#1 ------------------------------------------------------------
consensus_2661#0 ATGGTATTGATCCCATTGTGGAGCCCGAGATCCTCCCCGATGGAGACCACGACCTGCAGC 718
consensus_2661#1 ------------------------------------------------------------
consensus_2661#0 GCTGTCAGTATGTCACCGAGAAGGTGTAGGCTGCGGAGCACTAAGCTCTGCCAGACCACC 778
consensus_2661#1 ------------------------------------------------------------
consensus_2661#0 ACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT 832
consensus_2661#1 ------------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |