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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence
[CCGCCAAAGAGTCTCCCACCAACGTGCTTCTCTCCAGCTCGGGGCATAAAAGAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAAAGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA]
[+] EMBL CA846108 [CCGTCAATGAGTCTCCCACCAACGTGCTTCTCTCCAGCT GGGCATAAAAGAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTTGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCT ]
[+] EMBL CA588525 [ CGCTAAACAGTCTCCCACCAACGTCCTTCTCTCCAGCTCGGGTCATAAAACAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGTTTTGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAAAGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA]
consensusID : consensus_2666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 588 fasta sequence
[CCCGCATTCAGTCTCCCACCAACGGCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG-CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC-GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT-GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG-CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGGTGCTTGCAGAATTGCCAGGAGAGGAATCCTGAGTTCCAAATCACAAACGTGGTCGAAGCCGACCAGCAAATTCGTATTGAAAACTGGTGCAAGAAGAAGAAGGCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTGAGCGACGTTCTTCTGGTTTCAGAGAAATGC]
[+] EMBL BU806146 [CCCGCATTCAGTCTCCCACCAACGTCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGGTGC TGCAGTATTGCCAGGAGATGTATCCTGAGTTCCAAATCACAAACGTGGTCGAAGCCGACCAGCAAATTCGTATTGAAAACTGGTGCAAGAAGAAGAAGGCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTGAGCGACGTTCTTCTGGTTTCAGAGAAATGC]
[+] EMBL FR0058840 [ CAGTCTCCCACCAACGGCCTTCTCTTCAGCTTGGGTAACAAAACAAGCCGAG CGGTATTCCTTCCGTTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAAAAAAATGGGTCCGGTCTCGGCGATATCTGACCTCGATCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCGCAGTGTTTG ]
[+] EMBL FR0059594 [ GTAACAAAACAAGGCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGTTGCTTGCAGATTTGCCAGGAGAGGAATCC ]
[+] EMBL FR0061371 [ GTAACAAAACAAGCCGTG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGCATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTTGG ]
[+] EMBL FR0057667 [ TAACAGAACAAGCCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCAGGATACAAGTTTAGTCAGAGTCACAGAAGCGCAGATAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGGCAGTGCCGGGAACAGGGTTTGCTGTAGTTGAGCCCGAGGTGGCCATGTTCTGGTGGGAAACGCAACATGCACGTTAACATTCAGGCAGGGCGGTGGG ]
[+] EMBL FR0058246 [ ATGCCGAGACGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGGTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGGAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACG ]
[+] EMBL FR0058050 [ ATGCCGAGACGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGGTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGGAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACG ]
[+] EMBL FR0058937 [ TCCGCTCTGTGGAAGCGCTTGTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAGCCCCGACCCATCCGGGACCAAGAGCTGTGTAGGAc ]
[+] EMBL FR0058925 [ GGAAGCGCTTGTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGNGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2666#0 CCGCCAAAGAGTCTCCCACCAACGTGCTTCTCTCCAGCTCGGGGCATAAAAGAAGCCGAG 60
consensus_2666#1 CCCGCATTCAGTCTCCCACCAACGGCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG 60
** ** *************** ***************** * **** ********
consensus_2666#0 CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCC 120
consensus_2666#1 CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCC 120
************************************************************
consensus_2666#0 GTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGG 180
consensus_2666#1 GTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGG 180
************************************************************
consensus_2666#0 TCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTG 240
consensus_2666#1 TCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTG 240
************************************************************
consensus_2666#0 AGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACG 300
consensus_2666#1 AGGCA-------------CTAGCAGCCAATGCCGGCACAG----GGTTTGCTGTAGC-TG 282
*** * * ** ** **** *** ** * * *
consensus_2666#0 AAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTAT 360
consensus_2666#1 AGCCCCAGGTGGCCAT-------GTTCTGTGGGAAACTCAACATGCA--CGTTAACATTC 333
* *** * ** * *** ** ** *** **** *
consensus_2666#0 ATAAACCCCGCTAACGATCCCAG--AATTTGATCCATATGTACTGTAAAATCCTTAAGCG 418
consensus_2666#1 AGACAGGCCGCTGGGAGCCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCA-AAGAG 392
* * * ***** ** * * ** *** * **** * ** *** *
consensus_2666#0 AGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCA 478
consensus_2666#1 GGGGTGCTTGCAGAATTGCCAGGAGAGGAATCCTGAGTTCCAAATCACAAACGTGGTCGA 452
* * * * ** ** * * * * * ** *** ***** *
consensus_2666#0 AAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCG 538
consensus_2666#1 AGCCGACC-------AGCAAATTCGTAT---TGAAAACTG----GTGCAAGAAGAAGAAG 498
* ** ** * ** * * * ** **** * * * ** *
consensus_2666#0 TGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAA 598
consensus_2666#1 GCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTG 558
** ** ** * * * ** * * **** ** ** * **
consensus_2666#0 AGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA 650
consensus_2666#1 AGCGA---CGTTCTT-CTGGTTTCAGAGAAATGC------------------ 588
** * *** * ** * * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |