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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 642 fasta sequence
[TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG-GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC-TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA-GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC]
[+] EMBL CA591087 [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAAGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAAGCACCGATTCATAACGCCGTGTCCAATATCATCTGC]
[+] EMBL CA589631 [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTG ]
[+] EMBL CA590772 [ GTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGNGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCCATATC ]
[+] EMBL FR0059150 [ AATTATACACACGACATCTTCGTAAATATTATCAGAATGGAGGCGATACTCAGCACGGTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGNGCCGGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAA ]
[+] EMBL FR0059350 [ CACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGCACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGGCCCCTCATTCCACTGTTTGAAGCAT ]
[+] EMBL FR0059218 [ ACATCTTCGGAAATAGGATCAGAATGGAGGCGAGACTCACCACCCTCGGCTTGGAATGGATGCCACAGCAGGACCATCCTAATTTTTCTCTTGGCTTTTGTCTTGGTGGCCGAGTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGACCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATT ]
[+] EMBL FR0059584 [ TCGGAAATAGGATCAGGAGGGAGGCGATACTCAACACCCTCGCCTCGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGATTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGACCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTACAGACTTCACTTACAATTCGCAGAGTCCGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTATGGGGGAGAGTCGCTGTTCTGAACGGCTACTAAACTGTGAGAGAGGCA ]
[+] EMBL FR0059225 [ CGGAAATAGGATCAGAATGGAGGCGAGACTCAGCACCCTCGGCTTGGAATGGATG CACAGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGGTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGATAG ]
[+] EMBL FR0059939 [ ATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGNGGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGGTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGGGGAAAAGGGAGAAAACTTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTGGCTGGGAATAGAGGGGTGGGTGATAT ]
[+] EMBL FR0059084 [ AGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGNGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGA GCACTGGT GAAAAGGGAGAAAAC TTCG AGATCG CCCCTCATTCCACTGT ]
consensusID : consensus_2672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence
[CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT]
[+] EMBL FR0059631 [CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2672#0 TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGA 60
consensus_2672#1 --------------------------------------------------CATCTTCTGA 10
******* **
consensus_2672#0 AATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATGGACGGCAGG 120
consensus_2672#1 ATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACC 70
* ***** ***** ********* ***** ****** ** ***** ** ** **
consensus_2672#0 -ACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGT-TGGCCGATTACATAAAGAACAGAG 178
consensus_2672#1 CACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAG 130
********************** ** ** **** * ***** ****************
consensus_2672#0 TGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCA 238
consensus_2672#1 TGCCATCAAACTTTCCGCCCGGGCCGTG-CCCTTTCCCTTGATCGGCGATCTTCATCGCA 189
**************************** *** ************* *************
consensus_2672#0 TCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTT 298
consensus_2672#1 TCAACCTCTCCAGACTTCACTT-------------------------------------- 211
****** ***************
consensus_2672#0 TCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAG 358
consensus_2672#1 ------------------------------------------------------------
consensus_2672#0 AGGCACTGGTGGAAAAGGGAGAAAACTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAG 418
consensus_2672#1 ------------------------------------------------------------
consensus_2672#0 CATTTGCTGGGAATAGAGGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGA 478
consensus_2672#1 ------------------------------------------------------------
consensus_2672#0 GATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCA 538
consensus_2672#1 ------------------------------------------------------------
consensus_2672#0 TCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTT 598
consensus_2672#1 ------------------------------------------------------------
consensus_2672#0 ATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC 642
consensus_2672#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |