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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1402 fasta sequence
[GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT-ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG-GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTA-GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGACCGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTG-GGGGGAAAAAGAGGAAACAGGACATCCGTAACCTCGATGACCTGCGAAGCC]
[+] EMBL CA590817 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAG ]
[+] EMBL CA589585 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCCCCATCTTTGTGCCACCTGGGTAAa ]
[+] EMBL CA589811 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCGTTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAG ]
[+] EMBL CA591623 [cACTAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGGTGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCGTTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGG ]
[+] EMBL CA590108 [ ACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATCACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGTTATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAACGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAACAACA ]
[+] EMBL CA591599 [ AGGACATGGCCATGTGGAGGACAGCTGGAGCTCTCCTATAAAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAACTGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGTTTTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAAAGGTGGCCTTCATCAAACACACCACTGGTTTA GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCC ]
[+] EMBL FR0060030 [ ACTGTGTTTGCTCAGAGCAGGGGCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAATCACAGTTGAGGGATGCATTCAGAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGG ]
[+] EMBL FR0059924 [ GCAGATGCGTCTGGGGCAGCACAAGTGGGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTAGGAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGACTGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTC ]
[+] EMBL CA590962 [ CCTTCATCAAACACACCACTGTTTTA GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGATCGTGGTCCAAAATGACATCAGCCCATCTACGGTGTATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAG ]
[+] EMBL FR0059895 [ ATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGGTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTGTGGGGGAAAAAGAGTAAACCAGACATCC ]
[+] EMBL FR0059319 [ TGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAAGGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGGTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTG GGGGGAAAAAGAGGAACCAGGACATCCGTAACCTCGATGACCTGCGAAGCC]
consensusID : consensus_2685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCC]
[+] EMBL CA589739 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2685#0 GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGTG 60
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAA 120
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 GCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGA 180
consensus_2685#1 ---------------------------------------GACAAGGACATGGCCATGTGG 21
* * * ** *
consensus_2685#0 GTCACAGTTGAGGGATGCATTCAAAAACTAGA----GAAAAAAGCAGCAGATGCTT-TTT 235
consensus_2685#1 AGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTT 81
**** ** * *** * **** * ******************** ***
consensus_2685#0 CCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCA 295
consensus_2685#1 CCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCA 141
************************************************************
consensus_2685#0 GTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAG 355
consensus_2685#1 GTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAG 201
************************************************************
consensus_2685#0 CAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAG 415
consensus_2685#1 CAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAG 261
************************************************************
consensus_2685#0 GCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTG 475
consensus_2685#1 GCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTG 321
************************************************************
consensus_2685#0 TGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAG 535
consensus_2685#1 TGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAG 381
************************************************************
consensus_2685#0 GAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATGGTCTGG 595
consensus_2685#1 GAGCAACAGCGCAGGGCGACCCTCC----------------------------------- 406
*************************
consensus_2685#0 GGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAA 655
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 GGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTAGAGA 715
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 ACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGT 775
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCA 835
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TCCCATTCCGAGGGACCGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGC 895
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAG 955
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 GAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCA 1015
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAG 1075
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 ATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCT 1135
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 CTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGA 1195
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 CCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTT 1255
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 ACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAG 1315
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 AGGACCTCGATGGCTCCATCTACTATGCGATCGCTGGGGGGAAAAAGAGGAAACAGGACA 1375
consensus_2685#1 ------------------------------------------------------------
consensus_2685#0 TCCGTAACCTCGATGACCTGCGAAGCC 1402
consensus_2685#1 ---------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |