Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2694 cluster # 2694       Sequences # 12       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2694#0 length = 530 sequences # 11  
 consensus_2694#1 length = 419 sequences # 1  
consensusID : consensus_2694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 530
fasta sequence 
                              [CACAGTGAGGGGCCTGTGGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA]

[+] EMBL CA846249             [CACAGTGAGGGGCCTGTGGTGGAGGAAACGCCAGGATGCAGATTCTCTTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTAC                                                                           ]
[+] EMBL FR0055331            [                       GGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGT                                                            ]
[+] EMBL FR0055345            [                          AACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGACAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGGAAGTGCTG                                                             ]
[+] EMBL FR0057366            [                            CGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGGCAGCCACTTTGACCGTCACTACTGGCGGAA                                                                   ]
[+] EMBL FR0057260            [                                 GGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGTCACTATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAATGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTATACCACTCCAGGGAAGAACAGGCACACCAGGTAGAAGGTCAAACTGGGTGTGCTCA                                                                                                                                                                                         ]
[+] EMBL CA845060             [                                      CAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTG                                                             ]
[+] EMBL FR0058439            [                                      CAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGGTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGAGGATGAAAACGGTAAAATCCACCGTCTGCGACGCG                                                                                                                                         ]
[+] EMBL FR0055389            [                                           TTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGGAAGTG                                                                ]
[+] EMBL CA330537             [                                                                                                     ATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCTTACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGC                                                               ]
[+] EMBL CA847156             [                                                                                                                                                                                                                                                                                                                                                                                           CCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGA   ]
[+] EMBL CA330881             [                                                                                                                                                                                                                                                                                                                                                                                                                AGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA]




>consensus_2694#0
CACAGTGAGGGGCCTGTGGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCA
CGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCA
AAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAAC
AGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACT
TGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAA
AGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGG
ATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCG
GCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACT
GCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA

consensusID : consensus_2694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence 
                              [TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT]

[-] EMBL CA588788             [TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT]




>consensus_2694#1
TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAA
ACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTC
AAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCT
GGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACG
CTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACC
ACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTAC
AAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2694#0      ------CACAGTGAGGG-GCCTGTGGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAA 53
consensus_2694#1      TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAA 60
                                ** *    *      ***********************************

consensus_2694#0      ACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTC 113
consensus_2694#1      ACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTC 120
                      ************************************************************

consensus_2694#0      AAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCT 173
consensus_2694#1      AAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCT 180
                      ************************************** *********************

consensus_2694#0      GGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACG 233
consensus_2694#1      GGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACG 240
                      ************************************************************

consensus_2694#0      CTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACC 293
consensus_2694#1      CTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACC 300
                      ************************************************************

consensus_2694#0      ACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTAC 353
consensus_2694#1      ACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTAC 360
                      ************************************************************

consensus_2694#0      AAGGTGGATGAAAACGGTAAAATC-CACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTG 412
consensus_2694#1      AAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT- 419
                      ***********************  ********************************** 

consensus_2694#0      CGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCT 472
consensus_2694#1      ------------------------------------------------------------
                                                                                  

consensus_2694#0      GACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA 530
consensus_2694#1      ----------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)