|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 779 fasta sequence
[AAGCGAATCGATTCACTGACGTGACAAATAACTCCAATTTA-TCAGA--AGA--GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC-TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC-GGTGGAGTAC-AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCAACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTCAAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT]
[+] EMBL CA846195 [AACCGTTACAATTCACTGACGTGACAAATAACTCCAATTTA TCAGC ACATTTAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCTAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCAACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTCAAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT]
[+] EMBL CA589465 [AAGTGAATCGATTCACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAA ]
[+] EMBL BU808245 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCAC TTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGG ]
[+] EMBL BU806399 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTA CCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGAC ]
[+] EMBL BU805724 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTATTCAGANNAGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGT ]
[+] EMBL BU808350 [ CACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCTAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGTGTGTCGGCGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCTAAGAGCTCTCGAGAATGTTGAACTAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGGAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGC ]
[+] EMBL CA591219 [ CTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAG ]
[+] EMBL BU808348 [ CGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGG ]
[+] EMBL FR0061123 [ AACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGGGGGATGTCGGGGGGCAGGACA ]
[+] EMBL FR0062049 [ GTTTGAGTGGCGTGCGGTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGACGGGGGGAGTACAAAGAACATCAGTT ]
[+] EMBL FR0061328 [ GCGGGCCTTAAAGATAAACTCTTTTGTTCATTACTGGNTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGGGGGGGAAGTCGGTGGCCAGGACAA ]
[+] EMBL FR0061697 [ TTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGGGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGA ]
consensusID : consensus_2700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAGGACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTTTGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC]
[+] EMBL CA589804 [CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAGGACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTTTGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2700#0 AAGCGAATCGATTCACTGACGTGACAAATAACTCCAATTTATCAGAAGAGAGAAACGATT 60
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 AGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTAC 120
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 TGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCG 180
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 ACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAG 240
consensus_2700#1 ----------------------------CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAG 32
********************************
consensus_2700#0 ATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTC 300
consensus_2700#1 ATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTC 92
******************** ************ ** * * **************
consensus_2700#0 AAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGACGGTGGAG 360
consensus_2700#1 AAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAG 152
************************************** ********* ***********
consensus_2700#0 TACAAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTT 420
consensus_2700#1 GACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTT 212
** ******** ******* *********** **************** *******
consensus_2700#0 TGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGA 480
consensus_2700#1 TGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC--- 269
************** ** ******* * ********* * ****** ****
consensus_2700#0 GAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGT 540
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 GATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCA 600
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 GAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCA 660
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 ACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTC 720
consensus_2700#1 ------------------------------------------------------------
consensus_2700#0 AAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT 779
consensus_2700#1 -----------------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |