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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 711 fasta sequence
[CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC-TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC-GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT-TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG]
[+] EMBL BU805386 [CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCAC ]
[+] EMBL BU805635 [ TGTCCTGCGGGGGCTCTTGGTCTCCCGAGGAAAAGGGCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGATACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCC ]
[+] EMBL BU806621 [ GGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAGAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCATCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGTCTCGCCAGAGAGGAGATGGACACCCTGATGGAGGA GGGGATACTCTGTGG ]
[+] EMBL BU804864 [ GGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCATAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAA ]
[+] EMBL BU805502 [ ACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGG ]
[+] EMBL BU805133 [ ACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGA ]
[+] EMBL BU805653 [ ACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGATATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGAC ]
[+] EMBL FR0063358 [ CAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGGGGGGCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGGGAAAAC ]
[+] EMBL BU805659 [ GGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG]
[+] EMBL BU805444 [ GGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGA ]
[+] EMBL FR0063155 [ TCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATG ]
[+] EMBL FR0063162 [ GAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACGTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGG TCGGCAAAGAGGAGATGGACACCCTGGGGGAGGACACCGATACTCTGTGGCTGGATTACC ]
[+] EMBL FR0063119 [ GAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACGTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGA ]
consensusID : consensus_2709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTACGACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTGGA]
[+] EMBL BU806800 [GCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTACGACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2709#0 CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTG 60
consensus_2709#1 ------------------------------------------------------------
consensus_2709#0 GACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTT 120
consensus_2709#1 --------------------------------------------------GCTTCCTCTT 10
**********
consensus_2709#0 CGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACT 180
consensus_2709#1 CGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACT 70
************************************************************
consensus_2709#0 GCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTG 240
consensus_2709#1 GCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGA-------- 122
****************************************************
consensus_2709#0 CAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAG 300
consensus_2709#1 -------------------------------------------------TGGTGGCAAAG 133
***********
consensus_2709#0 TTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCA 360
consensus_2709#1 TTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCA 193
************************************************************
consensus_2709#0 GCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGCCGACATGTAC 420
consensus_2709#1 GCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTAC 253
************************************************* **********
consensus_2709#0 GACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTG 480
consensus_2709#1 GACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTG 313
************************************************************
consensus_2709#0 TGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTG 540
consensus_2709#1 TGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTG 373
************************************************************
consensus_2709#0 ACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTT 600
consensus_2709#1 ACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTT 433
************************************************************
consensus_2709#0 GACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAG 660
consensus_2709#1 GACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAG 493
************************************************************
consensus_2709#0 ATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG--------- 711
consensus_2709#1 ATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTG 553
***************************************************
consensus_2709#0 --
consensus_2709#1 GA 555
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |