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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[CCAAACGGGGGGGAACATAGAGGCGAAACCATGGCGAAGACGGGGGTCGCGGACTCAAAGATAGCGGCCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGATAGCTGAGCTGGGCCTGGGAATGATCAAAGATCTGACAACCAACGTGCTCACGGGTCTGGGAGCACCTGAAGCTCCACAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCGGAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTGTCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG]
[+] EMBL CA590576 [CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCT GGAGCACCTGAAGCTCCACAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCGGAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTGTCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG]
[+] EMBL FR0060451 [ aGGGGGAACATAGAGGCGAAACCATGGCGCACACGGGGGTCGCGGACTCAAAGATAGCGGTCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGTGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGATAGCTGAGCTGTGCCTGGGAATGATCAAAGATCTGACATCCAATGTGCTCACGGGTCTGGGAGCA ]
consensusID : consensus_2719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 588 fasta sequence
[ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG-AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC-TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC]
[+] EMBL CA590507 [ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCCCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATG ]
[+] EMBL CA590644 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC]
[+] EMBL CA590342 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTC ]
[+] EMBL CA333146 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACG ]
[+] EMBL FR0060342 [ GCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCG ]
[+] EMBL FR0060808 [ ATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGGACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGANGGCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGGG ]
[+] EMBL FR0060132 [ ATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCCCCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGGCATCACTCAGATTTCTCACCAGACGNTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCC ]
[+] EMBL FR0060236 [ TGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCCTTTCCCCGATA ]
[+] EMBL FR0060899 [ AAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGAGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGGCCAGTCCAAATGTCTGACGACGCTGAACACCAGGGAGGGGGCG ]
[+] EMBL FR0060931 [ AAAGAGAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGG ]
[+] EMBL BU807583 [ ATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATTAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTGTTAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCTCCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACG ]
[+] EMBL FR0060105 [ ATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCCCCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGCCC TTCCCCGATAGGAAGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGGCGGAGAGCATCACGTCTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2719#0 --------------CCAAACGGGGGGGAACATAGAGGCGAAACCATGGCGAAGACGGGGG 46
consensus_2719#1 ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGT 60
******** ************************* **** **
consensus_2719#0 TCGCGGACTCAAAGATAGCGGCCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGA 106
consensus_2719#1 TCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGA 120
******************** *************** ***********************
consensus_2719#0 GCGAGGAACAGTGGCGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGA 166
consensus_2719#1 GCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGA 180
***************** ******** ****************** **************
consensus_2719#0 TAGCTGAGCTGGGCCTGGGAATGATCAAAGATCTGACAACCAACGTGCTCACGGGTCTGG 226
consensus_2719#1 TCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGG 240
* ********** ***************** *********************** *****
consensus_2719#0 GAGCACCTGAAGCTCCACAGG--------------------------------------- 247
consensus_2719#1 -AGCACCTGAAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATC 299
********************
consensus_2719#0 ---------------------------------------ATGGACAGCGTCCAGTCCAAA 268
consensus_2719#1 ACTCAGATTTCTCACCAGACGTTGTCCTTCCCCGATAGGATGGACAGCGTCCAGTCCAAA 359
*********************
consensus_2719#0 TGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAA 328
consensus_2719#1 TGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAA 419
************************************************************
consensus_2719#0 TCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTC 388
consensus_2719#1 TCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTC 479
************************************************************
consensus_2719#0 AACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCC 448
consensus_2719#1 AACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCC 539
************************************************************
consensus_2719#0 CTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCG 508
consensus_2719#1 CTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC----------- 588
*************************************************
consensus_2719#0 GAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTG 568
consensus_2719#1 ------------------------------------------------------------
consensus_2719#0 TCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG 610
consensus_2719#1 ------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |