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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence
[AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAAGACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAGATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGACAGAACCTGACAGAATGGATGGAGATCCTGAAGACAGTAGTGGATAGAGACGTCCCTCCGGAAACTTCGCAAATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGTAAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAGTTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACCTCCTGCAACAAAAGAAAAGAGGTGCTGCAAAAGACGATGGGGTTCTGCTACCAGATTCTCATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCTGGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGCTCACGTC]
[+] EMBL BU807567 [AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAAGACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAGATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGACAGAACCTGACAGAATGGATGGAGATCCTGAAGACAGTAGTGGATAGAGACGTCCCTCCGGAAACTTCGCAAATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGTAAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATC ]
[+] EMBL BU807346 [ CTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAGTTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACCTCCTGCAACAAAAGAAAAGAGGTGCTGCAAAAGACGATGGGGTTCTGCTACCAGATTCTCATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCTGGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGCTCACGTC]
consensusID : consensus_2723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 723 fasta sequence
[AGATAAATAGAACTACAACTCCCACTCCGAACATCTCGCCGGATGTTCGTGTTGCACAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC-GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA-GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGGGTGGCTCGGCATCTTGCTTTGCCTTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGCACCTCTGGTGGCT]
[+] EMBL CA590366 [AGATAAATAGAACTACAACTCCCACTCCGAACATCTCGCCGGATGTTCGTGTTGCACAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTAT ]
[+] EMBL CA590711 [ ACATCTCGCCGGATGTTCGTGTTG CAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAG ]
[+] EMBL FR0060833 [ ACAAATTTGGCGCTGATCTATCCGGGAACTTCATTCACTGGTCCCTTTCGCGCCGGNTAACCGCAGAGCCGCGCGTCCATGTGCGCATC TGCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGAACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGGCACACCCAGGTATGCTTTGTGGCCACTCTGCTGCAGATCACCATGTCTGATCAGGCTGGATTTGCCTGTCAGGCAAGCAGGGGTGATTTATCTG ]
[+] EMBL FR0060986 [ TAGGCGGGTTCTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGCAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTGTGANCA ACTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTT ]
[+] EMBL FR0060938 [ AGGCGGATACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATCTGCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGGGGCCACTCTGCTGCAGATCACCATGGCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATTTGAAGAACATGAAAACTCAGCATTGGGGCGACGGGGATGGTTCAGGCACAGAGACGCCCGT ]
[+] EMBL FR0060530 [ GGGGACTTCATGGACTGCTTCCTTT CGGCCGATAACCGTAGAGCCG GCGTCCATGTGC CATC GCCTGGCAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGTATCCCGACGCTTTGGTCGAGGCCCTTGCGGCGACGATGGACCCCAGCCTGCGAGAGGTCGCCTAGAGACAGCTGAACGAGGGGCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGG ]
[+] EMBL CA333120 [ CTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGTTTTTGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGGACACCTGCATTCCTCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGAACAAGATTGGCTTCTAT ]
[+] EMBL FR0060591 [ TTCGCGCCGGTCAACCGGAGAGCCGCGCGTCCATGTGCGCATC TGCTGGTAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGTAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGCATCGATGGACCCCAGCCTGCGAGAGGCCGCTGAGAGACAGCTTAACGAGGGTCACA ]
[+] EMBL BU804853 [ GGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTCGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCT TCTTTATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCGTTGGAGCGACGGTGATCGTTCCGCCACACACACGCCCGTCAATAACCTTCCTGACGAGGACCGGGATATTCTCCTACGACGGATC ]
[+] EMBL CA589375 [ TAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGTAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTA ]
[+] EMBL BU805500 [ ACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATGACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGGGTGGCTCGGCATCTTGCTTTGCCTTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGCACCTCTGGTGGCT]
[+] EMBL FR0058112 [ ATCCGAAAAATCCGAGCCGCAGAGGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGCCCATC ]
[+] EMBL FR0058136 [ GCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCTAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2723#0 -AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAA 59
consensus_2723#1 AGATAAATAGAAC-TACAACTCCCACTCCGAACAT-CTCGCCGG-ATGTTCGTGTTGCAC 57
* * ***** * ** *** * *** * * * *** * ** ** *
consensus_2723#0 GACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAG 119
consensus_2723#1 AA--ATTTGGCGCTGAT-CTATCCGGGTACTTCATTCACTGCTTCCTTTCGCG---CCGG 111
* ** * * * ** *** *** * * *** * ** * * *
consensus_2723#0 ATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGA 179
consensus_2723#1 GTAACCGGAGAGCCGCGCGTCCATGTGCG------CATCGCCTGGGAACTGATACACGTC 165
* * * * * ** ** * * * ** ** ********* **
consensus_2723#0 CAGAACCTGACAGAATGGA--TGGAGATCCTGAAGACA-GTAGTGGATAGAGACGTCCCT 236
consensus_2723#1 TGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTG 225
** * ** * * ** * * * ** * * ***** ****
consensus_2723#0 CCGGAAACTTCGCAA---ATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGT 293
consensus_2723#1 GTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAG--GCCGCCGAGAGACAGC 283
** * ** * * *** ** * **** **** * * * *
consensus_2723#0 AAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAAC 353
consensus_2723#1 TGAACGAGGG----TCACACCCAGGTATGCTT----------TGTGTCCACTCTG----- 324
* * *** ***** * ** ** * * ** * * *
consensus_2723#0 ACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCT 413
consensus_2723#1 -CTGCAGATCACCATGTCTGATCAGCTGGATTTGCCTGTCAGGCAA--GCAGGTGTGATT 381
* * * * * * **** * ** * *** * **** * *
consensus_2723#0 CAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGA 473
consensus_2723#1 TATCTGAAGAACATGATAACTCAGCATTGGAGCGACG-GTGATGGTTCA-GGCACAGAGA 439
* * * *** * * * * * * * * * ** *** * ***
consensus_2723#0 -GTCCTCCAACAG-ACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGA 531
consensus_2723#1 CGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCAT--CGTGGA 497
* ** *** * * ** ** * * *** *** * * * * ****
consensus_2723#0 GAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCT-CATGTGT 590
consensus_2723#1 GG--CCATCATCCAC-TCTCCCGAGCGCA--TCAGGGTACAGTTGACCACCTGCATCCAT 552
* ** * **** * *** * ** ***** * *** ** *** *** *
consensus_2723#0 TACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAG 650
consensus_2723#1 CACATGATCAAGCATGACT-ACCCTGGCAAGTGGACCACCAT-----CGTGGAC---AAG 603
*** ** **** ** ***** * *** * * * * * ***
consensus_2723#0 TTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACC 710
consensus_2723#1 ATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGG-GTGGCTCGGCATCTTG-CTTTGCC 661
*** * * * * * * * * ** * ** * * *** *** **
consensus_2723#0 TCCTGCAACAAAAGAAAAGAGGTGC-TGCAAAAGACGATGGGGTTCTGCTACCAGATTCT 769
consensus_2723#1 TTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGC-ACC----TCT 716
* ** * ***** ** * ** * ** * * *** *** ***
consensus_2723#0 CATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCT 829
consensus_2723#1 GGTGGCT----------------------------------------------------- 723
* * *
consensus_2723#0 GGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGC 889
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TCACGTC 896
consensus_2723#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |