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Takifugu rubripes
cluster # 2726 cluster # 2726       Sequences # 15       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2726#0 length = 460 sequences # 8  
 consensus_2726#1 length = 403 sequences # 7  
consensusID : consensus_2726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 460
fasta sequence 
                              [GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG-CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA-AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAATGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT]

[+] EMBL CA330966             [GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTG                                                                                  ]
[+] EMBL CA330241             [                   GAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCT                                                                   ]
[+] EMBL CA845199             [                       AACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC                                                               ]
[+] EMBL CA330792             [                       AACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC                                                               ]
[+] EMBL FR0055539            [                           GTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGTGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGTAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACACTGTAGAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAATGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT]
[+] EMBL CA845626             [                              GTGCCAAGAAGGGCCGTGGCCACGTGCAGCCCCCTCCTCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAA                                                          ]
[+] EMBL FR0055853            [                                 CAATGAAGGGCCGTGGCAACTTGCAG CCCATCGGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAGAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACGCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCCTGACTAAGAAC                                                        ]
[+] EMBL CA333360             [                                 CCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTT                                                                  ]




>consensus_2726#0
GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAGC
CCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTG
TGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTG
ACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCC
ACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGA
GGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTT
AAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAA
TGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT

consensusID : consensus_2726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 403
fasta sequence 
                              [TGGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAAGAGACACAGAAAAAACCCCCGGGGGGGGCCCCGTTCCCCATTTTT]

[+] EMBL FR0056348            [TGGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAAAAGCCAAAAAAAAAACCCCCGGGGGGGGCCCCGTTCCCCATTTTT]
[+] EMBL FR0056891            [ GGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAGGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAGAAGGAGACGCGGg                                   ]
[+] EMBL FR0055931            [     ACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAATAAAAACAGATA                                 ]
[+] EMBL CA330602             [                         ACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTATTGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTG                                                      ]
[+] EMBL FR0057527            [                                                                    AGTTTGTGATCAGGAACATCGTGGTGGCAGCGGCTGTGAGAGACATCTCGGAGGCCATTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCAT                                                                                                                                                                                                                   ]
[+] EMBL CA330680             [                                                                                                                                                                                                                                      GGAAAGACCGCACGCCACCCCCGAGGTTTAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC                                                    ]
[+] EMBL CA845592             [                                                                                                                                                                                                                                                         CCCGAGCTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC                                                    ]




>consensus_2726#1
TGGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGC
CATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGA
GGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGT
CAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCG
CACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAAT
GTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAAGA
GACACAGAAAAAACCCCCGGGGGGGGCCCCGTTCCCCATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2726#0      GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAGC 60
consensus_2726#1      ----------------------------------------------TGGCCACGTGCAGC 14
                                                                    **************

consensus_2726#0      CCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTG 120
consensus_2726#1      CCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTG 74
                      ************************************************************

consensus_2726#0      TGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTG 180
consensus_2726#1      TGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTG 134
                      ************************************************************

consensus_2726#0      ACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCC 240
consensus_2726#1      ACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCC 194
                      ************************************************************

consensus_2726#0      ACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGA 300
consensus_2726#1      ACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGA 254
                      ************************************************************

consensus_2726#0      GGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTT 360
consensus_2726#1      GGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTT 314
                      ************************************************************

consensus_2726#0      AAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAA 420
consensus_2726#1      AAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAA----GAGACACAGAAA 370
                      *******************************************     * **  *  ***

consensus_2726#0      TGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT 460
consensus_2726#1      AAACCCCCGGG----GGGGGCCCCGTTCCCCATTTTT--- 403
                           *    *    *   * ** **     ******


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)