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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 669 fasta sequence
[ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTGGCAAGCCTG]
[+] EMBL BU805547 [ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGG ]
[+] EMBL BU805509 [ CCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCNGAGAGTATGCTGCGCAAAGCGAGGAGCCGCAC ]
[+] EMBL FR0063644 [ CCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGAGGGAGGTCGCCAACAAAGGTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGACAACTATTTCCTGGCGGGCCCCTACGGGGAGAGCAACGTGCGCACTCAGGGGGAG ]
[+] EMBL FR0061859 [ GATTTCTTTGTTTGGGTTGGCTCCGAGAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGCACGAGGTGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT ]
[+] EMBL BU804692 [ TGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGGAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGA ]
[+] EMBL CA591319 [ GTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTG ]
[+] EMBL FR0063131 [ GTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTCTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGgga ]
[+] EMBL BU805440 [ TTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTGGCAAGCCTG]
[+] EMBL FR0063425 [ CATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGG ]
[+] EMBL FR0063878 [ AACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGNGNGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACC ]
[+] EMBL BU805190 [ GGTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTTCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAG ]
consensusID : consensus_2728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 656 fasta sequence
[CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC-GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG]
[+] EMBL BU804779 [CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG]
[+] EMBL BU804670 [CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTG ]
[+] EMBL BU804834 [ GCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAAGTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGG ]
[+] EMBL FR0063665 [ ACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGAGCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGGGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGGAGAGTATtgct ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2728#0 ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTC 60
consensus_2728#1 -CTGGGGAAACTGTC---TTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCG 56
** ** *** * ** * ** ** * * *** * **
consensus_2728#0 CGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCA 120
consensus_2728#1 TAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCA 116
**** * * * * * * ** *********
consensus_2728#0 CTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTT 180
consensus_2728#1 CTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTT 176
************************************************************
consensus_2728#0 GATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGC 240
consensus_2728#1 GATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGC 236
************************************************************
consensus_2728#0 ATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT 300
consensus_2728#1 ATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT 296
************************************************************
consensus_2728#0 TTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCC 360
consensus_2728#1 TTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCC 356
************************************************************
consensus_2728#0 CCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTAC 420
consensus_2728#1 CCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTAC 416
************************************************************
consensus_2728#0 TTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACC 480
consensus_2728#1 TTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACC 476
************************************************************
consensus_2728#0 GCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCG 540
consensus_2728#1 GCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCG 536
************************************************************
consensus_2728#0 TGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC 600
consensus_2728#1 TGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC 596
************************************************************
consensus_2728#0 GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTG 660
consensus_2728#1 GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG 656
************************************************* *** ******
consensus_2728#0 GCAAGCCTG 669
consensus_2728#1 ---------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |