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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 468 fasta sequence
[GGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAACGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANANAAAAAAAGGGAAAAAAAATTTTTAAAAA]
[+] EMBL FR0057808 [GGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAACGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANANAAAAAAAGGGAAAAAAAATTTTTAAAAA]
[+] EMBL CA330341 [ GCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGA ]
[+] EMBL CA330564 [ TGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAA ]
consensusID : consensus_2742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 421 fasta sequence
[GGCCAAGCGCACCA-AGAAGGTGGGGATCGTTGGTAAA-TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAAGGGGAAAGGGAACCCCAGGGGGGGCCCGGTACCCAATTTTTGGCC]
[+] EMBL CA846958 [GGCCAAGCGCACCA AGAAGGTGGGGATCGTTGTTAAACTCTGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCT TTTTCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAA ]
[+] EMBL FR0055487 [ GCCAAGCGGACCATAGAAGGTGGGGATCGATGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGACATCTCGCAGCATTCAGAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAA ]
[+] EMBL FR0058311 [ AGCGCACCA AGAAGGTGGGTATCTTTGGTAAA TATGGAACGCGTTACGGGGCCTCGCTGAGGAAGATGGTGAACAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCAGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCc ]
[+] EMBL CA329894 [ CGCACCA AGAAGGTGGGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAA ]
[+] EMBL CA846870 [ AGGTGGGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCATCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAACGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACG ]
[+] EMBL CA845173 [ GGGATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCG ]
[+] EMBL FR0056915 [ GATCGTTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAGTCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTAGCCGACCTGGACATGGCTACATCAAAGGTAAAATG ]
[+] EMBL FR0056237 [ TTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGATGAAAATTGATATCTCCCAGCATTCAGCGTACAGCTGCTCTTTCTGTGGCAGGACCAAGATGAGGAGAGGGGCTGTTGGGCTCTGGCACTGTGGGTCCTGCAGGAACACGGTGGCTGGAGGTGCCTGGCCGTATAACACAGCGTCAGCCGTCACAGTCAAGTCTGCAc ]
[+] EMBL FR0056715 [ TTGGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAGACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAGGGGGGGATGGGt ]
[+] EMBL FR0055490 [ GGTAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGACGAGAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGACGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCATGAAGACGGTGGCTGGAGGTGCCTGGACCTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTACACCATGTCATTCACTGGT ]
[+] EMBL FR0055805 [ TAAA TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAACGGCAAAGGGAATCCCAGCG ]
[+] EMBL FR0056433 [ TATGGAACGCGTTACGGCGCCTCGCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATTAAATGTTCTGGACCGGA ]
[+] EMBL FR0056181 [ CCAGCATTCAAAGTACACCTGCTCTTTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAGGAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTCTGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATTTGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCTGGACCGGAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGTACCCAATTTTTGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2742#0 ----------------------------------------GGAACGCGTTACGGCGCCTC 20
consensus_2742#1 GGCCAAGCGCACCAAGAAGGTGGGGATCGTTGGTAAATATGGAACGCGTTACGGCGCCTC 60
********************
consensus_2742#0 GCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTT 80
consensus_2742#1 GCTGAGGAAGATGGTGAAGAAAATTGAAATCTCCCAGCATTCAAAGTACACCTGCTCTTT 120
************************************************************
consensus_2742#0 CTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAG 140
consensus_2742#1 CTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTTGGAATCTGGCACTGTGGGTCCTGCAG 180
************************************************************
consensus_2742#0 GAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTC 200
consensus_2742#1 GAAGACGGTGGCTGGAGGTGCCTGGACGTATAACACAACGTCAGCCGTCACAGTCAAGTC 240
************************************************************
consensus_2742#0 TGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATT 260
consensus_2742#1 TGCAATCAGGAGACTGAGAGAGTTGAAGGACCAGTAAACCATGTCATTCACTGGTGGATT 300
************************************************************
consensus_2742#0 TGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCT 320
consensus_2742#1 TGGGACTTTTTCTATAATTTATCCGACCTGGACATGGCTACATCAAAAATAAAATGTTCT 360
************************************************************
consensus_2742#0 GGACCGGAAAACTGTCTCTGTTAATCTATTGTTGTCGGCAATAATACAACCCTCTGATAA 380
consensus_2742#1 GGACCGGAAAAAAAAAGGGGAAAGGGAACC----CCAGGGGGGGCCCGGTACCCAATTTT 416
*********** * * * * * * * * *
consensus_2742#0 CGTTCCAAATGAAGGATTACCCAAGTTAAAAGCTTTTTCCCCTCAAAAAAAAAAAAANAN 440
consensus_2742#1 TGGCC------------------------------------------------------- 421
* *
consensus_2742#0 AAAAAAAGGGAAAAAAAATTTTTAAAAA 468
consensus_2742#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |