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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 415 fasta sequence
[TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG-CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAA--AAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG]
[+] EMBL FR0057474 [TCCCCTTTGCTAGCGTACGACGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAGAGTACAACTGGGGTGACAAGGCCACGAGGACGAACACCACTGGAACTGGGCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGCAATGGTTTCCGGGAAGGTACCACCCCCATGCCCAGACGCGCTGCAGTGGACGCATCCAGCTCATCCTAACGACACATTTTTGG ]
[+] EMBL CA589380 [ TAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAAT ]
[+] EMBL CA330505 [ GAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAA ]
[-] EMBL CA588692 [ ACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCCCTGGAACTGGCCGCGTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCC ]
[+] EMBL FR0055820 [ CTCATCTTACGGTAAGCCGCCGGAACAAGACGAACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCAGCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATG ]
[+] EMBL CA333517 [ TTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT ]
[+] EMBL FR0058590 [ AGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAATNAAAAT AAAAAAAA ]
[+] EMBL FR0055974 [ GACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAAAGAACAAAAAAAAAAAAACCCCCCGGGGGGGCCCCGGCCCCCAATTTTTG ]
[+] EMBL FR0056982 [ ACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAATACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG ACAAA ANAAAAAAAAAAAAAACCCCGAGGGGGG CCCGGGAACCAAGTTTTGGG]
[+] EMBL CA847133 [ CGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATA ]
[+] EMBL CA845373 [ GTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCTTTTTTTGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT ]
[+] EMBL FR0057394 [ GTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG AAAAAA AAAAAAAAAAAAAAAACCCCGGGGGGGGGC ]
[+] EMBL CA333203 [ CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAA ]
[+] EMBL CA588162 [ CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAA ]
[+] EMBL CA845684 [ AATGGTTTCCGGGAAGGCACCACCCCC AACCCTTAC AGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTA ]
consensusID : consensus_2747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA]
[+] EMBL CA330581 [CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2747#0 TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAGCGCCGGAA 60
consensus_2747#1 ----------------------------------------------------CCNGGATT 8
* *
consensus_2747#0 CAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 120
consensus_2747#1 TTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 68
*********************************************************
consensus_2747#0 CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 180
consensus_2747#1 CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 128
************************************************************
consensus_2747#0 CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 240
consensus_2747#1 CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 188
************************************************************
consensus_2747#0 ATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGC 300
consensus_2747#1 ATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGC 248
******************* **** *** *******************************
consensus_2747#0 ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAA 360
consensus_2747#1 ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA------- 301
*****************************************************
consensus_2747#0 AAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG 415
consensus_2747#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |