cluster # 2813

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Takifugu rubripes
cluster # 2813 cluster # 2813 Sequences # 23 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2813#0 length = 357 sequences # 14

consensus_2813#1 length = 334 sequences # 8
consensus_2813#2 length = 330 sequences # 1

consensusID : consensus_2813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 357
fasta sequence

                              [GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA----AAAAAAAGCCCGGGGGGGGGCCGGGAACCAAGTTTTGGCC]

[+] EMBL CA330990             [GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT                                                       ]
[+] EMBL CA330513             [              caAAATGTCGTCCCACAAAACTTTCAGGATTTAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAA                                                ]
[+] EMBL CA330963             [                      CGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAGCAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT                                                       ]
[+] EMBL CA330377             [                          CCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAC                                                        ]
[+] EMBL FR0055477            [                           CACAAGACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGTCGCAGCACAGGCCCATTCCTCAGTGGCTCAGCATGACGACTGGCAACAAGATCAGGTACANCTCTACGAGGAGACACTGGAGGAGGACCAAGCTTGGNCTGTNACCGGGAGGGTCGCCACGTCACCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGCTATGCTCATGTTTGACATTAACAGATCTGTGATCAAACTTGAAATGGATATGCTCAAGAATGCCCTTGGGGGGACCGGGACCCAACTTTTGGCC]
[+] EMBL CA330924             [                               AAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT                                                       ]
[+] EMBL CA845781             [                                 ACTTTCAGGATCACCTGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTT                                                      ]
[+] EMBL FR0056311            [                                  CTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTG AAAAAAAA    AAAAAAACCCCGAGGGGGGGCCCGGTACCAAGTTTTGGTC]
[+] EMBL FR0056266            [                                     TCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAGAG                                                                      ]
[+] EMBL CA844860             [                                        GGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGG                                                                                                                                                                                                             ]
[+] EMBL FR0058034            [                                         GATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA    AAAA                                    ]
[+] EMBL FR0056025            [                                          ATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA    AAAAAAAACCCCGGGGGGGG                    ]
[+] EMBL CA844486             [                                                               AAGCACCTTCAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA                                            ]
[+] EMBL CA333602             [                                                                                                                                      CAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGT                                                                                                                  ]




>consensus_2813#0
GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT
AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAG
ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA
GGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG
CAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT
CAAACTTGAAAAAAAAAAAAAAAAGCCCGGGGGGGGGCCGGGAACCAAGTTTTGGCC

consensusID : consensus_2813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 334
fasta sequence

                              [ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA-AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT-CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAGAGAGAGGGA-ACAAAAAAGACCCAGGGGGGGGCCCGGGACCAAATTTTTGGC]

[-] EMBL CA588853             [ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACC                                                                                                                                           ]
[+] EMBL CA844958             [        TCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAA                                                      ]
[+] EMBL FR0055480            [                    ACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAACAGATCTGTGATCAAACTTGAAATGGATACAAAAAAGTCTCAGGGGGGGCCCCGTGACCAAATTTTTGAC]
[+] EMBL CA844585             [                         CAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAa                                                    ]
[+] EMBL FR0056926            [                                             CTAAGAAGCAGACACAGAACAGGCCCATTCCTCAGTGGTTCAGTCTGGAGACTGGGAACATTGAGCAGGTACAACTCCAAGAGGAGACACTGGCGGAGGACCAGGCTTGGCCTGTAACCGGGAGGGTCGCCATGTCAGCATCCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGA                                                                  ]
[+] EMBL FR0057389            [                                                    GCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAGAGAGAGGG    AAAAAAAACCCCGGGGGGGGCCCGGGACCCAATTTTTGG ]
[+] EMBL CA330272             [                                                              AACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAc                                                     ]
[+] EMBL CA846693             [                                                                                                                           AAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAA                                                      ]




>consensus_2813#1
ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAAC
AGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACT
CCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTC
AGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACAT
TGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAGAGAGAGGGAACAAAAAA
GACCCAGGGGGGGGCCCGGGACCAAATTTTTGGC

consensusID : consensus_2813#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT]

[+] EMBL FR0055530            [AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT]




>consensus_2813#2
AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAG
AACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAGATCAGGTACAACTCC
AAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAG
CATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGATGTTTTGTACAGACATTG
GTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAATTGGAAAAGCTCATG
TTTCAAAGGGGGGCCTGTGACCAAATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2813#0      GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 60
consensus_2813#1      -------------ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 47
consensus_2813#2      ---------------AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 45
                                      ********************************************

consensus_2813#0      AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAG 120
consensus_2813#1      AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAG 107
consensus_2813#2      AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAG 105
                      ***************************************** ******************

consensus_2813#0      ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 180
consensus_2813#1      ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 167
consensus_2813#2      ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 165
                      ************************************************************

consensus_2813#0      GGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 240
consensus_2813#1      GGGTCCCCA----------TGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 217
consensus_2813#2      GGGTCCCCA----------TGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 215
                      *********          *****************************************

consensus_2813#0      CAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 300
consensus_2813#1      CAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 277
consensus_2813#2      CAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 275
                      ****** *****************************************************

consensus_2813#0      CAAACTTGAAAAAAAAAAAAAAAAGCC-CGGGGGGGGGCCGGGAACCAAGTTTTGGCC 357
consensus_2813#1      CAAAAGAGAGAGGGAACAAAAAAGACC-CAGGGGGGGGCCCGGGACCAAATTTTTGGC 334
consensus_2813#2      CAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT--- 330
                      ****   **     ** *    *     *   ******** *  ***** ****

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)