|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 423 fasta sequence
[CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG-GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC-A-AAANA-A-AAAAAAAAAACCCCGGGGGGGGCCCGGGTCCCAAGTTTTGGCCCCCTTTATGGGG]
[-] EMBL CA588742 [CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACAT ]
[+] EMBL FR0057833 [ AGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AAATG A GGAAAAAAAACCCCGGGGGGGGCCCGGGAACCAACTTTTGGC ]
[+] EMBL FR0057580 [ ATGGCTATCCGCTACCCCATGGCCATCGGTCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATA ]
[+] EMBL CA329879 [ CTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ]
[+] EMBL CA844468 [ CTATCCGCTACCCCATGGCCATCGGCCTGAGTAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ]
[+] EMBL CA845392 [ CTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ]
[+] EMBL CA330930 [ GCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ]
[+] EMBL CA845594 [ TACCCCATGGCCATCGGCCTGAGTAAAGGCCACCTGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAAC ]
[+] EMBL CA845421 [ TGGCCATCGGCCTGAATAAAGGCCACCCGGCCCCTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAATATAACTAGATAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGATAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACNC G AAAAA ]
[+] EMBL FR0057606 [ GGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AAANAGG AAAAAAAAAACCCCAGGGGGGGCCCGGTTCCCAATTTT ]
[+] EMBL FR0057664 [ GCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A NNANA N NAAAAAAAACCCCCGGGGGGGGCCCGGTTCCCAATTTTTG ]
[+] EMBL FR0055215 [ TCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AGAGA AGAAAAAAAAAACCCCGGGGGGGGGCCGGGTCCCAACTTTTGGCCCCCTTTATGGGG]
[+] EMBL FR0057637 [ CCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A GATGG A AGAAGGAAACTCCCGGGGGGGGCCCCGTTCCCAAGTTTTGGCCC ]
[+] EMBL CA845579 [ CCTGAATAAAGGCCACCCGGTCAC CTTAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ]
[+] EMBL FR0057633 [ CTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAGCACAGCAGGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAGGAAGAGGATTG GGACTCACATTAGGGCTAAGAGAAGGAGAGAGGAGCTCAGCAGCGTTCTGGGTGCCATGAGGAAAGCTGCTGCCAGGAAAGACTGAGCTGTTAATAA ]
[+] EMBL FR0055355 [ AATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC ANNATGT G AAAAAAAAAACCTCAGGGGGGGCCCGGGACCCCAGTTTTGGC ]
[+] EMBL FR0057585 [ AAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A ANNNA A NTTAAAAAACCCCCGGGGGGGGCCCCG ]
[+] EMBL FR0057746 [ AGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A ATTGG G TACAAAAAAACCCCGGGGGGGGCCCCGG ]
[+] EMBL FR0056367 [ GGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A CGATG G GGATCAAAggaa ]
[+] EMBL FR0056534 [ GCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGGATCAAAGGACAAGAG ]
[+] EMBL FR0056015 [ CCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A TAATA C AAAAAGAAA ]
[+] EMBL CA845070 [ CGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC N AAAAA ]
[+] EMBL CA330629 [ CACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACTTTATGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ]
[+] EMBL FR0056898 [ GCTCCCAACCACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAGGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A NAANA N ANAAAAAAAACCCCGAGGGGGGGCCCGTTACCAAGTTTTGGGCC ]
[-] EMBL FR0055876 [ ccTGCTCCTTATGAGAGGCGACCCATGGAGCTGCTGAAGGTATCAAAGGACACGAGGCCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGC ]
[+] EMBL CA333434 [ GACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ]
[+] EMBL CA845095 [ CAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACA ]
[+] EMBL CA333372 [ ATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ]
[+] EMBL CA845512 [ GATTGCCCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ]
[+] EMBL FR0056294 [ TCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACACAA AAAAA A AAAAAAAAAACCCCAGGGGGGGCCCGGGTACCAACTTTTGGTCC ]
[+] EMBL CA330466 [ GGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ]
consensusID : consensus_2867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 72 fasta sequence
[GAGTGCCAATCCTCTTCTTGATGAACTTCAGAGCCCTCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT]
[+] EMBL CA588786 [GAGTGCCAATCCTCTTCTTGATGAACTTCAGAGCCCTCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2867#0 CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCC 60
consensus_2867#1 ---------------GAGTGCCAATCCTCTTCTTGATGAACTTCAG---------AGCCC 36
** * **** ** * *** * ** * ** **
consensus_2867#0 ACCCGGTCACTAAAAATGTAA--CTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGAC 118
consensus_2867#1 TCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT------------------------ 72
* * * * * * * * ** * ** **
consensus_2867#0 TAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGA 178
consensus_2867#1 ------------------------------------------------------------
consensus_2867#0 GAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAA 238
consensus_2867#1 ------------------------------------------------------------
consensus_2867#0 GAAGAGGATTGGCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCT 298
consensus_2867#1 ------------------------------------------------------------
consensus_2867#0 GGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA 358
consensus_2867#1 ------------------------------------------------------------
consensus_2867#0 CACAAAANAAAAAAAAAAAACCCCGGGGGGGGCCCGGGTCCCAAGTTTTGGCCCCCTTTA 418
consensus_2867#1 ------------------------------------------------------------
consensus_2867#0 TGGGG 423
consensus_2867#1 -----
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |