|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT]
[+] EMBL CA846003 [CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT]
consensusID : consensus_307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG]
[+] EMBL CA330562 [TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_307#0 CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAAC 60
consensus_307#1 ------------------------------------------------------------
consensus_307#0 GCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTT 120
consensus_307#1 ------------------------------------------------------------
consensus_307#0 CTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAA 180
consensus_307#1 ----------------------------------------------------------TT 2
consensus_307#0 CGCTGCTTGCC--CAAGTGTC-CACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCA 237
consensus_307#1 TGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCC 62
**** **** *** **** ***** * *** ** ***** ** ** *
consensus_307#0 GGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTG 297
consensus_307#1 G---TTGCCAGAGAGAGGTTAGCTGTG----GGACTGGCTA-CGAACTCACTGATAATAA 114
* * ****** * ** * ****** * * * * ** ** *
consensus_307#0 GGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACA 357
consensus_307#1 CAACT-GCAAAGATATTGACGAGAGTGAG-ACTGGAATCCATAACTGC-GGCCAGGATTT 171
* *** ** * * * *** **** ** * * *** ** *
consensus_307#0 TGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCA 417
consensus_307#1 TGCGTGCCA-------GAACACG---------CAGGGATCATTCCGCTGTCTCCCGAAGG 215
** * *** **** * ** ***** * * *
consensus_307#0 ACACCTGCGAGACCAAGACTA-CAAAGATGTGCTGCGACTGT-TGTCTTCTGGGGAAGGT 475
consensus_307#1 TCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAAT 275
** ** * * * * * * **** ** * * * ** * *
consensus_307#0 GGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCA 535
consensus_307#1 GTGTCAGTCACACGAGC--CCATGCCAC----AGAGGGCAGATGTGTATCAACACCGTCG 329
* *** *** * ** *** ** * * * * ** * * * * *
consensus_307#0 GGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCA 595
consensus_307#1 GCT--CCTACAACTGT----CAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCA 383
* * ** * ** *** *** ** * * * * *** **
consensus_307#0 AACTAAATTGCCAGCCCAGGA-TGATACAGATAAAAATGGAGATAACTCAGTTCTGACTG 654
consensus_307#1 GCGAAGATGGCAAACGATGCACTGATATTGACGAA--TGTAAAAACCCCGAGAATGTTTG 441
* ** ** * * * * ***** ** ** ** * * * * * ** **
consensus_307#0 ATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCG 714
consensus_307#1 TCTCGGTCACGGCTGCATCAACATGG-------TGGGCTCTTATCGCTGTGAGTGTCAGG 494
* ** * * * ** * ***** * ** * *** *
consensus_307#0 ACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGA 774
consensus_307#1 CTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACT 554
****** **** * * ***** ** ** ** ** ** **
consensus_307#0 GTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT 827
consensus_307#1 ATCCTGGTCGTCTTTGTGCCCACAAGTG-TGAAAACACTCTG----------- 595
* * * * *** ** * ** * ** * *
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |