cluster # 326

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Takifugu rubripes
cluster # 326 cluster # 326 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_326#0 length = 546 sequences # 1

consensus_326#1 length = 362 sequences # 1

consensusID : consensus_326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [ATTGAAGGACCACTTCAAAGGAACAATCAGGTAACGGGACAAAGAAAAGCATCTGTATTGCTTTCTATTTTATTTCTCTGCAACACTATTGACTGAACTTGCTCTGACAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGTGTTTCAATCTTCTGAGCATTACTTCTGCAGCTCGCAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCAGGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGGTGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGGTGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTTCTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATGCTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG]

[+] EMBL CA330703             [ATTGAAGGACCACTTCAAAGGAACAATCAGGTAACGGGACAAAGAAAAGCATCTGTATTGCTTTCTATTTTATTTCTCTGCAACACTATTGACTGAACTTGCTCTGACAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGTGTTTCAATCTTCTGAGCATTACTTCTGCAGCTCGCAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCAGGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGGTGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGGTGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTTCTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATGCTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG]




>consensus_326#0
ATTGAAGGACCACTTCAAAGGAACAATCAGGTAACGGGACAAAGAAAAGCATCTGTATTG
CTTTCTATTTTATTTCTCTGCAACACTATTGACTGAACTTGCTCTGACAGGAAAGAAGAT
GTTCGTGCGACAGAGAAAGACAAGGTGTGTTTCAATCTTCTGAGCATTACTTCTGCAGCT
CGCAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCAGGTGGAGATTTACTAAAGCTTCA
GGCCTGGTGACATTGTCCTGGCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACC
TGTTGACAACAGCAGAGAATGAACTGGGGGTGGTGGTAGCACACAGTGAATCAGGTAAAC
GTCACCGCTCACTTCAACATTGTGAACACAAGGTGGCGACAAAGTAACACAGCAAAATCG
ATCCAGAAATGTGACCAATTAAGACTTTTTGTTCTCCAGGTGCAGTGATGGTTCCAATCA
GTTGGAGTGAGATGCAGTGCCCACTGACTTATGCTAAAGAGTTACGTAAAGTTGCACGAG
TGCAGG

consensusID : consensus_326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCCGTGGTGAGAGGAACAGAATTACAACTGCTACCAGATGTGGGAGCAATAGTCACCTGTAAGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGTCATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGGGGGG]

[+] EMBL FR0060166            [TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCCGTGGTGAGAGGAACAGAATTACAACTGCTACCAGATGTGGGAGCAATAGTCACCTGTAAGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGTCATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGGGGGG]




>consensus_326#1
TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCC
GTGGTGAGAGGAACAGAATTACAACTGCTACCAGATGTGGGAGCAATAGTCACCTGTAAG
GTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGTCA
TTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAGAC
AAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGTCT
CTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGGGG
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_326#0      -----ATTGAAGGACCACTTCAA-AGGAACAATCAGGTAACGGGACAAAGAAAAGCATCT 54
consensus_326#1      TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCC 60
                          * *    * * *  **   ***** * * ***  *  *  * *   *     ** 

consensus_326#0      GTATTGCTTTCTATTTTATTTCT-CTGCAACACTATTGACTGAACTTGCTCTGACAGGAA 113
consensus_326#1      GTGGTGAGAGGAACAGAATTACAACTGC--TACCAGATGTGGGAGCAATAGTCACCTGTA 118
                     **  **      *    *** *  ****   ** *      * *       * **  * *

consensus_326#0      AGAAGATGTTCGTGCGACAGAGAAA-GACAAGGT--GTGTTTCAATCTTCTGAGCATTAC 170
consensus_326#1      AGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGT 178
                     **  **    * *    *  ***   * *** **     *   **   ** *  *     

consensus_326#0      TTCTGCAGCTCG----CAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCA--------- 217
consensus_326#1      CATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAG 238
                        ** **  *     **   *   **  * **  *  * * ** **   *         

consensus_326#0      ----GGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGT 273
consensus_326#1      ACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGT 298
                         ************* ***************************** ************

consensus_326#0      CTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGG 333
consensus_326#1      CTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGG 358
                     ******************************************* ************* **

consensus_326#0      TGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGG 393
consensus_326#1      GGGG-------------------------------------------------------- 362
                      **                                                         

consensus_326#0      TGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTT 453
consensus_326#1      ------------------------------------------------------------
                                                                                 

consensus_326#0      CTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATG 513
consensus_326#1      ------------------------------------------------------------
                                                                                 

consensus_326#0      CTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG 546
consensus_326#1      ---------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)