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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA]
[+] EMBL FR0057562 [TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA]
consensusID : consensus_335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT]
[+] EMBL CA330853 [GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_335#0 TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGT 60
consensus_335#1 ------------------------------------------------------------
consensus_335#0 ACCAGAGGAGGGGGACAGGAAGTAC-CTGAAAGACTGGGCCAGAGACGAGTTCAAACGGA 119
consensus_335#1 -----------------GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGA 43
******* **** ***************************
consensus_335#0 ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATC 179
consensus_335#1 ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATC 103
********************************************** *************
consensus_335#0 TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGC 239
consensus_335#1 TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGC 163
****************************** *****************************
consensus_335#0 GCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAA 299
consensus_335#1 GCTAGAACCAGGAGGTG---------------GACTGATAACGCAACTCTCCCAGCTTAA 208
***************** ************* **************
consensus_335#0 GAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCG 359
consensus_335#1 GAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCG 268
*** *** ******************************* **** * **********
consensus_335#0 AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA------------------- 400
consensus_335#1 AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTC 328
************************************* ***
consensus_335#0 -------------------------------------
consensus_335#1 AACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT 365
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |