cluster # 364

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Takifugu rubripes
cluster # 364 cluster # 364 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_364#0 length = 366 sequences # 1

consensus_364#1 length = 309 sequences # 1

consensusID : consensus_364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [GGAATTATTAGACGGGTCTAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTGTTAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGAATCTGATCGGGTGATCGTGGCAACCGTATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGATGAACCATCTT]

[+] EMBL FR0060297            [GGAATTATTAGACGGGTCTAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTGTTAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGAATCTGATCGGGTGATCGTGGCAACCGTATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGATGAACCATCTT]




>consensus_364#0
GGAATTATTAGACGGGTCTAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTGT
TAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTATTG
AGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTA
GAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCT
GCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGAATCTGATCGGGTGA
TCGTGGCAACCGTATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGATGAAC
CATCTT

consensusID : consensus_364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGGTCACTGTCCCTGAGCTGCTGCTTGATTTCAGACACTAACTTGACTTCTTCTGCTTTCTTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGGGGATCGGGGCAACCGGGATTCTCAGGACGGCT]

[+] EMBL FR0060514            [AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGGTCACTGTCCCTGAGCTGCTGCTTGATTTCAGACACTAACTTGACTTCTTCTGCTTTCTTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGGGGATCGGGGCAACCGGGATTCTCAGGACGGCT]




>consensus_364#1
AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCA
TCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGGTCACTGTCCCTGAGCTGCTG
CTTGATTTCAGACACTAACTTGACTTCTTCTGCTTTCTTCAGCAGCTCCTGGGGGATGCT
GGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATT
ATTGATTTCGTCAATCATTGACCGGAATCTGATCGGGGGATCGGGGCAACCGGGATTCTC
AGGACGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_364#0      GGAATTATTAGACGGGTC-TAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTG 59
consensus_364#1      ---AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTT--CTTAGTTTCTTG 55
                        *  ** * *     * **     ** *     * * *  ** *   * *****  **

consensus_364#0      T-TAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTAT 118
consensus_364#1      CATCATCACACGCTGACGGGTGTTACCG---ACGGCCACCACTAGAGGTCAC--TGTCCC 110
                       * *     ******   ** * ** *         * * *** * ** **  * *   

consensus_364#0      TGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCAC 178
consensus_364#1      TGAGCTGCTGCTTGATT---------TCAGACACTAACT--TGACTTCTTCTGC--TTTC 157
                     ***** * *  * * **         *** ** ** **   **    *  * **     *

consensus_364#0      TAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAAT 238
consensus_364#1      TTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAAT 217
                     *  ************* ******** **********************************

consensus_364#0      CTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCG-AATCTGATCGGG 297
consensus_364#1      CTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGG 277
                     *********************************************** ************

consensus_364#0      TGATCGTGGCAACCGT-ATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGAT 356
consensus_364#1      GGATCGGGGCAACCGGGATTCTCAGGACGGCT---------------------------- 309
                      ***** ********  ***** *********                            

consensus_364#0      GAACCATCTT 366
consensus_364#1      ----------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)