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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[TCCACCTCCAGTGTAGCTGGACCAGTAATCTGTGAGCAATGTGGCATGACGTTCCCTTCAGTCCAGGCTTTAACGGTCCACACCTGCACCGCTCACCCCCTGTACTCCTGCCCGTGCTGCGCTAAACAGTTCCACCACTCTGCTAACCTGACGCGACACATGGCCGTGCACAGAGGTGCTGGCAAATGCCACCAGTGCCCTCTTTGCTACAAGACCTTCACTCAAAAATCCACCCTCATCGATCACATGAACCTCCACAGTGGCGAGCGGCCACACCATTGTGCGTACTGCCACGCACGCTTCGCACACAAACCCGCATTACGGCGACACCTGAAGGAACTGCACGGGAAAACGACAGCGCAGAACTTCCTGTATGAGCAACAGGAACAGGAGAGAGGAAAAGGAATCCAGGAGGGGGGGCAGGATCCTCCAGCTCTGGCATAAACCACGAAGCTTCTGCTGGACATCAGCGTAACAAGGACCAAACATGACTGAGGAGCTGTCAGCCCCCCCCCCCCCCCGGGTGTTTCCATTGCTAGTGATAGATCATTGGACCACTAGACTTTCAGAATCAATGGTAAAGGACTGTTGGAACTCTTGAAGTATCTCCTGCTGT]
[+] EMBL CA846491 [TCCACCTCCAGTGTAGCTGGACCAGTAATCTGTGAGCAATGTGGCATGACGTTCCCTTCAGTCCAGGCTTTAACGGTCCACACCTGCACCGCTCACCCCCTGTACTCCTGCCCGTGCTGCGCTAAACAGTTCCACCACTCTGCTAACCTGACGCGACACATGGCCGTGCACAGAGGTGCTGGCAAATGCCACCAGTGCCCTCTTTGCTACAAGACCTTCACTCAAAAATCCACCCTCATCGATCACATGAACCTCCACAGTGGCGAGCGGCCACACCATTGTGCGTACTGCCACGCACGCTTCGCACACAAACCCGCATTACGGCGACACCTGAAGGAACTGCACGGGAAAACGACAGCGCAGAACTTCCTGTATGAGCAACAGGAACAGGAGAGAGGAAAAGGAATCCAGGAGGGGGGGCAGGATCCTCCAGCTCTGGCATAAACCACGAAGCTTCTGCTGGACATCAGCGTAACAAGGACCAAACATGACTGAGGAGCTGTCAGCCCCCCCCCCCCCCCGGGTGTTTCCATTGCTAGTGATAGATCATTGGACCACTAGACTTTCAGAATCAATGGTAAAGGACTGTTGGAACTCTTGAAGTATCTCCTGCTGT]
consensusID : consensus_394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TTTCATGTTTTTAATGATATGAAGTAGCTTCTCCTGCTGCAGTTCCTGTAAGTTCCAACATTGCACACACCAACGTTCCTAAAGGATTTACAGAACAGTCAGAGTTGACACTTGCTGTAATCTAAACGTGGTTCCAATAAGTGAGAATAAACTGCTTAAGTAGACTTTAAACTGGTGTCCCGGTTGGAAACATTTATCTGAGTGGACTGAAGTAAGTCCGACCTTCTCTCAGGTGCAGTAACGTTTGACCGACCCAACCTGGTGCCCTCAGGTCTGGAGCAGTCCAATGAGCCCCGGTTCAGAACAGCCGAGCGGACGCGTAGAACCCTTAATATCTCAGACCTGAGCCGTACAGCAGGAGATACTTCAAGAGTTCCAACAGTCCTTTACCATTGATTCTGAAAGTCTAGTGGTCCAATGATCTATCACTAGCAATG]
[+] EMBL CA331397 [TTTCATGTTTTTAATGATATGAAGTAGCTTCTCCTGCTGCAGTTCCTGTAAGTTCCAACATTGCACACACCAACGTTCCTAAAGGATTTACAGAACAGTCAGAGTTGACACTTGCTGTAATCTAAACGTGGTTCCAATAAGTGAGAATAAACTGCTTAAGTAGACTTTAAACTGGTGTCCCGGTTGGAAACATTTATCTGAGTGGACTGAAGTAAGTCCGACCTTCTCTCAGGTGCAGTAACGTTTGACCGACCCAACCTGGTGCCCTCAGGTCTGGAGCAGTCCAATGAGCCCCGGTTCAGAACAGCCGAGCGGACGCGTAGAACCCTTAATATCTCAGACCTGAGCCGTACAGCAGGAGATACTTCAAGAGTTCCAACAGTCCTTTACCATTGATTCTGAAAGTCTAGTGGTCCAATGATCTATCACTAGCAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_394#0 TCCACCTCCAGTGTAGCTGGACCAGTAATCTGTGAGCAATGTGGCATGACGTTCCCTTCA 60
consensus_394#1 ----------------------TTTCATGTTTTTAATGATATGAAGTAGCTTCTCCTGC- 37
* * * * ** ** * * * *** *
consensus_394#0 GTCCAGGCTTTAACGGTCCACACCTGCACCGCTCACCCCCTGTACTCCTGCCCGTGCTGC 120
consensus_394#1 -TGCAGTTCCTGTAAGTTC----CAACATTGCACACACCA-ACGTTCCTA--AAGGATTT 89
* *** * ** * * ** ** *** ** **** * *
consensus_394#0 GCTAAACAGTTCCACCACTCTGCTAACCTGACGCGACACATGGCCGTGCACAGAGGTGCT 180
consensus_394#1 ACAGAACAGTCAGAGT-TGACACTTGCTGTAATCTAAACGTGGTTCCA---ATAAGTGAG 145
* ****** * ** * * * * ** *** * * ***
consensus_394#0 GGCAAATGCCACCAGTGCCCTCTTTGCTACAAGACCTTCACTCAAAAATCCACCCTCATC 240
consensus_394#1 AATAAACTGCTTAAGTAGACTTTAAACTG-GTGTCCCGGTTGGAAACATTTATCTGAGTG 204
*** * *** ** * ** * ** *** ** * * *
consensus_394#0 GATCACATGAACCTCCACAGTGGCGAGCGGCCACACCATTGTGCGTACTGCCACGCACGC 300
consensus_394#1 GACTGAAGTAAGTCCGACCTTCTC--TCAGGTGCAGTAACGTTTGACCGACCCAACCTGG 262
** * ** * ** * * * * ** * ** * * ** * *
consensus_394#0 TTCGCACACAAACCCGCATTACGGCGACACCTGAAGGAACTGCACGGGAAAACGACAGCG 360
consensus_394#1 T--GCCCTCAGGTCTGGAGCAGTCCAATGAGCCCCGGTTCAGAACAGCCGAGCGGACGCG 320
* ** * ** * * * * * * ** * * ** * * ** ***
consensus_394#0 CAGAACTTCCTGTATGAGCAACAGGAACAGGAGAGAGGAAAAGGAATCCAGGAGGGGGGG 420
consensus_394#1 TAGAACCCTTAATATCTCAGACCTGAGCCGTACAGCAGGAGAT-ACTTCAAGAGTTCCAA 379
***** *** ** ** * * * ** * * * * * ** ***
consensus_394#0 CAGGATCCTCCAGCTCTGGCATAAACCACGAAGCTTCTGCTGGACATCAGCGTAACAAGG 480
consensus_394#1 CAG--TCCTTTACC------ATTGATTCTGAAAGTCTAGTGGTCCAATGATCTATCACTA 431
*** **** * * ** * *** * * * ** ** **
consensus_394#0 ACCAAACATGACTGAGGAGCTGTCAGCCCCCCCCCCCCCCCGGGTGTTTCCATTGCTAGT 540
consensus_394#1 GCAATG------------------------------------------------------ 437
* *
consensus_394#0 GATAGATCATTGGACCACTAGACTTTCAGAATCAATGGTAAAGGACTGTTGGAACTCTTG 600
consensus_394#1 ------------------------------------------------------------
consensus_394#0 AAGTATCTCCTGCTGT 616
consensus_394#1 ----------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |