cluster # 399

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Takifugu rubripes
cluster # 399 cluster # 399 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_399#0 length = 493 sequences # 1

consensus_399#1 length = 427 sequences # 1

consensusID : consensus_399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGACTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCAGCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACCTCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGACGTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCGACTCAAGGCAACGTGTACGTGAAGTGCCCCTCGATTCCGGCGGCGATGGCGACCGTCAACGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCCGACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACGCCGATAATGGGATGCAAC]

[+] EMBL FR0055990            [GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGACTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCAGCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACCTCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGACGTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCGACTCAAGGCAACGTGTACGTGAAGTGCCCCTCGATTCCGGCGGCGATGGCGACCGTCAACGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCCGACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACGCCGATAATGGGATGCAAC]




>consensus_399#0
GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGA
CTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCA
GCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACC
TCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGACGTCA
TCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCGACTC
AAGGCAACGTGTACGTGAAGTGCCCCTCGATTCCGGCGGCGATGGCGACCGTCAACGCCC
TTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCCGACCT
ANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACGCCGAT
AATGGGATGCAAC

consensusID : consensus_399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [TGGATAAAGTTTATTGGGAGCCTCCATACAAAAAAAATGAACTTATGGCTGTAGAAAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACCCCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACAGTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGTGGCGGTTTACAGCACAAACCCACAAATCTGAAAAGCAACTCAAAAGATTTACTTACAATGTGAACACTTGAACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACGTGGCCCGGTGACGTTTTCGTGGATGCAAACAAATGTATTTACACGGCGTCCCCACGTGTTGCATCGCATTATCGGCGTGACGGCATCAGGAGCTGCTTCGCGGTCAC]

[+] EMBL CA331450             [TGGATAAAGTTTATTGGGAGCCTCCATACAAAAAAAATGAACTTATGGCTGTAGAAAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACCCCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACAGTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGTGGCGGTTTACAGCACAAACCCACAAATCTGAAAAGCAACTCAAAAGATTTACTTACAATGTGAACACTTGAACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACGTGGCCCGGTGACGTTTTCGTGGATGCAAACAAATGTATTTACACGGCGTCCCCACGTGTTGCATCGCATTATCGGCGTGACGGCATCAGGAGCTGCTTCGCGGTCAC]




>consensus_399#1
TGGATAAAGTTTATTGGGAGCCTCCATACAAAAAAAATGAACTTATGGCTGTAGAAAGTT
ACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACCCCAGATTTTACTCA
TTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACAGTAATATTTAAAACA
CAGATACCTGCAGATTACGTCTCAGTGGCGGTTTACAGCACAAACCCACAAATCTGAAAA
GCAACTCAAAAGATTTACTTACAATGTGAACACTTGAACTTGAGGCAACCTTTATTACAT
ACGACAAACTAATTTCGACGTGGCCCGGTGACGTTTTCGTGGATGCAAACAAATGTATTT
ACACGGCGTCCCCACGTGTTGCATCGCATTATCGGCGTGACGGCATCAGGAGCTGCTTCG
CGGTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_399#0      GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGA 60
consensus_399#1      ------TGGATAAAGTTTATTGGGAGCCTCCATACA------AAAAAAATGAACTTATGG 48
                             **   *  *  *  * **  ***           *  *   *   *  *** 

consensus_399#0      CTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCA 120
consensus_399#1      CTGTAGA-AAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACC- 106
                     *** *   * **       **  ***    **    * *   *   **  * ** * ** 

consensus_399#0      GCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACC 180
consensus_399#1      -CCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACA 165
                      ****  * *   * *  *   *   *       *  * ****          *  *** 

consensus_399#0      ----TCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGAC 236
consensus_399#1      GTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGT-GGCGGTTTACAGCACAAA 224
                         * ** **  *****  *      ***  *  **  *  * **   * **  ** * 

consensus_399#0      GTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCG 296
consensus_399#1      CCCACAAATCTGAAAAGCAA-CTCAAAAGATTTACTTACA---ATGTGAACA---CTTGA 277
                       **   *   *   * *** *    * *  *   * ***   * *** ***     *  

consensus_399#0      ACTCAAGGCAACGTGTACGTGAAGTGCCCCTC-GATTCCGGCGGCGATGGCGACCGTCAA 355
consensus_399#1      ACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACG----TGGC--CCGGTGA 331
                     ***  ******* * **    *   * *   *  *** ** **    ****  ***   *

consensus_399#0      CGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCC 415
consensus_399#1      CGTT-TTCGTGGA--------TGCAAACAAATGTATTTACACGGCGT-----CCCCACGT 377
                     **   *** ****        ****  ** *   **     * ****     **** *  

consensus_399#0      GACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACG 475
consensus_399#1      GTTGCATCGCA---TTATCGGCGTGACGGCATCAG--GAGCTGCTTCG----CGGTCAC- 427
                     *    * * **   ** **  **   * *   * *   *** *** **    * ***** 

consensus_399#0      CCGATAATGGGATGCAAC 493
consensus_399#1      ------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)