cluster # 44

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Takifugu rubripes
cluster # 44 cluster # 44 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_44#0 length = 629 sequences # 1

consensus_44#1 length = 484 sequences # 1

consensusID : consensus_44#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGACCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTTCCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTGCTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTACACCAGGGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCCGGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACATGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATGACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTCAGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGA]

[+] EMBL BU808316             [ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGACCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTTCCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTGCTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTACACCAGGGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCCGGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACATGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATGACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTCAGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGA]




>consensus_44#0
ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGA
CCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTT
CCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTG
CTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGT
GGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTACACCAGGG
CTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCCGG
ATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACATG
ACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATGAC
ATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTCAGG
ACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTGATA
ATTGCAAGCTGGTGACAGAGGAGTGCAGA

consensusID : consensus_44#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATACAGATGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGACTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTGCAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAGTACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGCAGCGACTAGAAAAGGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCCTCAGGGACGGGTACGAGAAGTCTTTCGACCGCTTGCAG]

[+] EMBL CA590851             [CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATACAGATGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGACTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTGCAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAGTACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGCAGCGACTAGAAAAGGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCCTCAGGGACGGGTACGAGAAGTCTTTCGACCGCTTGCAG]




>consensus_44#1
CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATACAGATGAT
GCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCAT
CTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGACTTTGACATGAC
CTTATGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAATATCATTGATAA
TTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTGCAGCTGAAAAACAAGTATTA
TCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAGTACCCCTTCATGGTCGAGTG
GTATTATAATTCCCACACGCTACTGGTGGAGCAGCGACTAGAAAAGGACAAACTAGCAGA
GGTGGTGAGAGAATCCGATGCTGCCCTCAGGGACGGGTACGAGAAGTCTTTCGACCGCTT
GCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_44#0      ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGA 60
consensus_44#1      ------------------------------------------------------------
                                                                                

consensus_44#0      CCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTT 120
consensus_44#1      ------------------------------------------------------------
                                                                                

consensus_44#0      CCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTG 180
consensus_44#1      --------CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATA 52
                               ** * *    **     *  **  *  * *** * *   *    *  * 

consensus_44#0      CTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGT 240
consensus_44#1      CAGAT----GATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGT 108
                    *  *     ***************************************************

consensus_44#0      GGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTA--CACCAG 298
consensus_44#1      GGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGA 168
                    ************************************************* *   ***   

consensus_44#0      GGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCC 358
consensus_44#1      CTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAG---CGTTGTCCAACGTGTCA 225
                       ** ** **  * *  **    * ***    **   *    ** **  *   *   * 

consensus_44#0      GGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACA 418
consensus_44#1      CAATATCA-----TTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTG 280
                      **** *     ** * *  **     ** ** *       *    *****   **   

consensus_44#0      TGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATG 478
consensus_44#1      CAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAG 340
                       *   **   *  *      * ** ** * **     ** *    **  * *   * *

consensus_44#0      -ACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTC 537
consensus_44#1      TACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGC-AGCGACT 399
                     **    *       ** *  * *  *  **      *  ** **      * ***    

consensus_44#0      AGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTG 597
consensus_44#1      AGAAAA--GGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCC-----TCAGGG 452
                    ** *    * **           *  *****    ****  *  * * *     ***  *

consensus_44#0      ATAATTGCAAGCTGGTGACAGAG-GAGTGCAGA 629
consensus_44#1      ACGGGTACGAGAAGTCTTTCGACCGCTTGCAG- 484
                    *    * * **  *      **  *  *****

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)