|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG]
[+] EMBL CA332140 [ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG]
consensusID : consensus_468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG]
[+] EMBL FR0056756 [AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_468#0 ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGA 60
consensus_468#1 ------------------------------------------------------------
consensus_468#0 CAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCA 120
consensus_468#1 ------------------------AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGA 36
* ** **** ** * * *** * *
consensus_468#0 GGTAGGTGATATTAGTCTCAATAAAAATGCAAAAA-CATTTCCATTGTCACAAAGTGGAA 179
consensus_468#1 AATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAG 96
* *** * * * * * * * ** * ** *** * ** * *
consensus_468#0 GACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGG 239
consensus_468#1 CGCCTTTAACGGGT-------TCTCCTTC-GTGGCCACCGAGGACAGCTTC-CTGTGAGG 147
** * * **** *** **** **** * ** * * *** **
consensus_468#0 ATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTT---TGGATCTA 296
consensus_468#1 CGGGAACGCT--CTGACG-CGAGC-TCTTCCTGCAGTGCCGGAGACTTTCTCTATACGAC 203
* * * ****** ** * * ***** ** * *** ** * *
consensus_468#0 CCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACAT 356
consensus_468#1 CTCTACTGAACTCTGCTCCCCGTTGAAG-ATGAGACACTACATGGATGACTTTATTACAT 262
* ** *** * *** ** * ** ** *** ** * * ****
consensus_468#0 TCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGC 416
consensus_468#1 C---ACACGTAGTTTTTTTGTTTTAGTGC-GCACATTTGGTGATTCAGTCCAGGAACGGT 318
* * ** * * ** * *** * *** * * * * **
consensus_468#0 GACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTT 476
consensus_468#1 TGTGAA----CAGGCTGGACGGGACACGCAGA-CACGTATGACGCAAGTGAAA-----TC 368
*** * * * * ** ** ** * * **** * *** *
consensus_468#0 CTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCC 536
consensus_468#1 ATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG------------------ 410
* * * * ** ** * * * * * **
consensus_468#0 TGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG 586
consensus_468#1 --------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |