cluster # 473

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Takifugu rubripes
cluster # 473 cluster # 473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_473#0 length = 462 sequences # 1

consensus_473#1 length = 316 sequences # 1

consensusID : consensus_473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AGATCACGACAAAGGCACTTTTACTGACTTGATTCTCAATACACGTAAAATACAACTTTTAAAAACAGCAAAAGGAGACAGTGTAAACAGACTGGTTTCTCCTGTTCAATGCCCACCAATCACGTGTCTCCCCTTGAGTTACAGGATAAGAACATGGTTATTCTTTATTAAAAAAAAAAAAAAAAAAGAGAGAGAGAAAGCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGTGATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCTACACAAATCTGCGCTGCAGCGCAAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTCAGATGGTTTAAGACAGCAGATCTTTACAATATCTTTAGTTATTTTCAGGATGTGAACCAATGTAGAACTTTGGGACAGCCAAACCAGAGCCAGGTCAACTCC]

[+] EMBL CA332170             [AGATCACGACAAAGGCACTTTTACTGACTTGATTCTCAATACACGTAAAATACAACTTTTAAAAACAGCAAAAGGAGACAGTGTAAACAGACTGGTTTCTCCTGTTCAATGCCCACCAATCACGTGTCTCCCCTTGAGTTACAGGATAAGAACATGGTTATTCTTTATTAAAAAAAAAAAAAAAAAAGAGAGAGAGAAAGCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGTGATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCTACACAAATCTGCGCTGCAGCGCAAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTCAGATGGTTTAAGACAGCAGATCTTTACAATATCTTTAGTTATTTTCAGGATGTGAACCAATGTAGAACTTTGGGACAGCCAAACCAGAGCCAGGTCAACTCC]




>consensus_473#0
AGATCACGACAAAGGCACTTTTACTGACTTGATTCTCAATACACGTAAAATACAACTTTT
AAAAACAGCAAAAGGAGACAGTGTAAACAGACTGGTTTCTCCTGTTCAATGCCCACCAAT
CACGTGTCTCCCCTTGAGTTACAGGATAAGAACATGGTTATTCTTTATTAAAAAAAAAAA
AAAAAAAGAGAGAGAGAAAGCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGT
GATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCTACACAAATCTGCGCTGCAGCGC
AAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTC
AGATGGTTTAAGACAGCAGATCTTTACAATATCTTTAGTTATTTTCAGGATGTGAACCAA
TGTAGAACTTTGGGACAGCCAAACCAGAGCCAGGTCAACTCC

consensusID : consensus_473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [TAAAAAAAAGACTAATCGGTACCAAAAAAAAAAAGAGAGAGAGAGAAACCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGTGATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCCACACAAATCAGCGCTGCAGCGCAAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTCAGATGGTTTAAGACAGCAGATCTTCACAATATCTTTAGTTATTTTCAGGATGTGAACCAATGTAGAACTTTGGGACAGCCTAATCAGAGCCAGGTCAGGTGGCACCA]

[-] EMBL FR0057233            [TAAAAAAAAGACTAATCGGTACCAAAAAAAAAAAGAGAGAGAGAGAAACCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGTGATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCCACACAAATCAGCGCTGCAGCGCAAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTCAGATGGTTTAAGACAGCAGATCTTCACAATATCTTTAGTTATTTTCAGGATGTGAACCAATGTAGAACTTTGGGACAGCCTAATCAGAGCCAGGTCAGGTGGCACCA]




>consensus_473#1
TAAAAAAAAGACTAATCGGTACCAAAAAAAAAAAGAGAGAGAGAGAAACCCGATTCACGT
CACAGGATAAAGATCCACGTAGCTCATGTGATACCCGCGATGGCCACAAGATGGCGCCAT
AGTTGCCACACAAATCAGCGCTGCAGCGCAAACACAGGTTCAGGTCCCGGAGGTACGTTC
AGGAGCAGGGAAAATCAGGGTGTGGCGTCAGATGGTTTAAGACAGCAGATCTTCACAATA
TCTTTAGTTATTTTCAGGATGTGAACCAATGTAGAACTTTGGGACAGCCTAATCAGAGCC
AGGTCAGGTGGCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_473#0      AGATCACGACAAAGGCACTTTTACTGACTTGATTCTCAATACACGTAAAATACAACTTTT 60
consensus_473#1      ------------------------------------------------------------
                                                                                 

consensus_473#0      AAAAACAGCAAAAGGAGACAGTGTAAACAGACTGGTTTCTCCTGTTCAATGCCCACCAAT 120
consensus_473#1      ------------------------------------------------------------
                                                                                 

consensus_473#0      CACGTGTCTCCCCTTGAGTTACAGGATAAGAACATGGTTATTCTTTATTAAAAAAAAAAA 180
consensus_473#1      --------------------------TAAAAAAAAGACTAATCGGTACCAAAAAAAAAAA 34
                                               *** ** * *  ** **  **  ***********

consensus_473#0      AAAAAAAGAGAGAGAGAAAGCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGT 240
consensus_473#1      GA-----GAGAGAGAGAAACCCGATTCACGTCACAGGATAAAGATCCACGTAGCTCATGT 89
                      *     ************ ****************************************

consensus_473#0      GATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCTACACAAATCTGCGCTGCAGCGC 300
consensus_473#1      GATACCCGCGATGGCCACAAGATGGCGCCATAGTTGCCACACAAATCAGCGCTGCAGCGC 149
                     ************************************* ********* ************

consensus_473#0      AAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTC 360
consensus_473#1      AAACACAGGTTCAGGTCCCGGAGGTACGTTCAGGAGCAGGGAAAATCAGGGTGTGGCGTC 209
                     ************************************************************

consensus_473#0      AGATGGTTTAAGACAGCAGATCTTTACAATATCTTTAGTTATTTTCAGGATGTGAACCAA 420
consensus_473#1      AGATGGTTTAAGACAGCAGATCTTCACAATATCTTTAGTTATTTTCAGGATGTGAACCAA 269
                     ************************ ***********************************

consensus_473#0      TGTAGAACTTTGGGACAGCCAAACCAGAGCCAGGTCAACTCC----- 462
consensus_473#1      TGTAGAACTTTGGGACAGCCTAATCAGAGCCAGGTCAGGTGGCACCA 316
                     ******************** ** *************  *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)