cluster # 480

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Takifugu rubripes
cluster # 480 cluster # 480 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_480#0 length = 633 sequences # 1

consensus_480#1 length = 469 sequences # 1

consensusID : consensus_480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTCCGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGTTATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATATGCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACATTGTCCTTTCCTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGACTCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGTATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAAAATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCCACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTTCAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC]

[+] EMBL CA589912             [AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTCCGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGTTATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATATGCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACATTGTCCTTTCCTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGACTCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGTATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAAAATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCCACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTTCAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC]




>consensus_480#0
AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTC
CGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGT
TATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATAT
GCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGC
AGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACA
TTGTCCTTTCCTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGACT
CAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGTA
TTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAAA
ATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCCA
CGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTTC
AGAAGCAAAGGGCGGTTTTCTGTACTCACATAC

consensusID : consensus_480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCCTGAGCCAATCAGGATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATATTTTCTGTGAACTATTTTTATTTATTTGGTGCTTCTCAAATATCATTATCAAAGGAAAACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTGATAAATGTTTTATTACAATACACCAATTCATATCCGGGAGAATATTTTTCTTTCAAAACATATACATATATAAAATACAGTTTAGTGGATTTCATTTAAAAAAAAAATATGTGCACAAAGTTTTTTCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCAAATGTCTACCGGCCCATTTTAA]

[+] EMBL CA332221             [CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCCTGAGCCAATCAGGATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATATTTTCTGTGAACTATTTTTATTTATTTGGTGCTTCTCAAATATCATTATCAAAGGAAAACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTGATAAATGTTTTATTACAATACACCAATTCATATCCGGGAGAATATTTTTCTTTCAAAACATATACATATATAAAATACAGTTTAGTGGATTTCATTTAAAAAAAAAATATGTGCACAAAGTTTTTTCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCAAATGTCTACCGGCCCATTTTAA]




>consensus_480#1
CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCCTGAGCCAATCAGGATT
CAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGCAGCGAAG
CCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATATTTTCTG
TGAACTATTTTTATTTATTTGGTGCTTCTCAAATATCATTATCAAAGGAAAACAGAAAAC
ATGATGGTAAAAACTACTTTATATACAGTGCCTGATAAATGTTTTATTACAATACACCAA
TTCATATCCGGGAGAATATTTTTCTTTCAAAACATATACATATATAAAATACAGTTTAGT
GGATTTCATTTAAAAAAAAAATATGTGCACAAAGTTTTTTCTGACAAAGAATTTTTGTAA
GAAATCCATACAATATGCTTTTATGCAAATGTCTACCGGCCCATTTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_480#0      AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTC 60
consensus_480#1      ------------------------------------------------------------
                                                                                 

consensus_480#0      CGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGT 120
consensus_480#1      ------------------------------------------------------------
                                                                                 

consensus_480#0      TATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATAT 180
consensus_480#1      --CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCC---TGAGCCAATCA 55
                         *      **      * *** * *     *     ***       * * *  **  

consensus_480#0      GCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGC 240
consensus_480#1      G--GATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGC 113
                     *     *  **  * * *  *       ***   **    * ******************

consensus_480#0      AGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACA 300
consensus_480#1      AGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATA 173
                     ************************************************ *      ** *

consensus_480#0      TTGTCCTTTC-CTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGAC 359
consensus_480#1      TTTTCTGTGAACTATTTTTATTTATT-TGGTGCTTCTCAAATAT-CATTATCAAAGGAA- 230
                     ** **  *   ** ***   ** *** *  **  ** **  * * **** *  * *  * 

consensus_480#0      TCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGT 419
consensus_480#1      --AACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTG---ATAAATGTTTT 285
                       ** * ** *  *     *   ****     *   *  *  * **   * ***** * *

consensus_480#0      ATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAA 479
consensus_480#1      ATTAC--------AATACACCAATTCATATCCGGGAG-AATATTTTTCTTTCAAAACATA 336
                     ***            **      ***  *   ** *  **  ***** **   *     *

consensus_480#0      AATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCC 539
consensus_480#1      TAC-ATATATAAAATACAGTTTAGTG-GATTTCATTTAAAAAAA------AAATATGTGC 388
                      *  ****  ***      ***  *  *****   **    *        *** ** * *

consensus_480#0      ACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTT 599
consensus_480#1      ACAAAGTTTTT-TCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCA 447
                     ** *  * * * * *  * *  *      ****      ***         **  * *  

consensus_480#0      CAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC 633
consensus_480#1      AATGTCTACCGGCCCATTTTAA------------ 469
                      *     *  ** *  ****

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)