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Takifugu rubripes
cluster # 565 cluster # 565       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_565#0 length = 565 sequences # 1  
 consensus_565#1 length = 362 sequences # 1  
consensusID : consensus_565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence 
                              [CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCTTGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCCATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGTGGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCCAGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTATTGTCCGCAGGCTTGGCCTGAAGAAC]

[+] EMBL CA333149             [CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCTTGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCCATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGTGGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCCAGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTATTGTCCGCAGGCTTGGCCTGAAGAAC]




>consensus_565#0
CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAG
ACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCT
TGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCC
ATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACAC
CATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCC
TAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGAT
GTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGT
GGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCC
AGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTAT
TGTCCGCAGGCTTGGCCTGAAGAAC

consensusID : consensus_565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence 
                              [GTTTGATTTTGCTGTTAAACCACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGGGGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCCAGAGCTGTCCCTGCTG]

[+] EMBL CA333341             [GTTTGATTTTGCTGTTAAACCACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTATGTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGGGGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCCAGAGCTGTCCCTGCTG]




>consensus_565#1
GTTTGATTTTGCTGTTAAACCACATCGATTTTAGAGACACGACTAGTCCTTGAGGCATTT
GCGTGTATTTCTGTGCTCCGGCGGCTCCGGGACCGTGCGCGGACACCATGCCTTATCTGG
GCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCCTAATGTCCAGTCTG
ACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTATGTCACAGGGCGTTG
ATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGGGGATATTGTTCAGA
AAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCCAGAGCTGTCCCTGC
TG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_565#0      CGATGTCAACAATACTGTCATGATGTTTGATTTTGCTGTTAAACGACATCGATTTTAGAG 60
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      ACACGACTAGTCCTTGAGGCATTTGCGTGTATTTCTGTGGTGCGTTCATCGTTTTGCTCT 120
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TGAATGCTTTTATCGGGTGTAGTTTTATGGAGTAAACTAACGTCTTACAAACCGCCGTCC 180
consensus_565#1      -----------GTTTGATTTTGCTGT-TAAACCACATCGATTTTAGAGACACGACTAGTC 48
                                 *  * * * * * * *  *  * *   *  *   * * **  *    *

consensus_565#0      ATATCTGTCCCATACGTGTATTGTGGCAGCTCCGGCGGCTCCGGGACCGTGCGCGGACAC 240
consensus_565#1      CT-TGAGGCATTTGCGTGTATTTCTGT-GCTCCGGCGGCTCCGGGACCGTGCGCGGACAC 106
                      * *  * *   * ********   *  ********************************

consensus_565#0      CATGTCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCC 300
consensus_565#1      CATGCCTTATCTGGGCAACGAGGAGGCCGTGAGGGAGCTGAGGAGAGCCCTGTCCAACCC 166
                     **** *******************************************************

consensus_565#0      TAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCAGAGGGAT 360
consensus_565#1      TAATGTCCAGTCTGACCAGCTGAGATACAGAAACACTGTCCTCAAAGTCATCATATTTAT 226
                     ***************************************************** *   **

consensus_565#0      GTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGAGATGGTTAAAGCCTGCGCCTCAGT 420
consensus_565#1      GTCACAGGGCGTTGATGTGTCGGGCCTCTTCTCCGATATGGTTAAAGCCTGCGCCTCAGG 286
                     ************************************ ********************** 

consensus_565#0      GGATATTGTTCAGAAAAAACTGGTCTACGTCTTCCTTTGTTCCTACCCGACTTTTAATCC 480
consensus_565#1      GGATATTGTTCAGAAAAAACTGGGCTACGTCTTCCTTTGTTCCTACGCGACTTTAAATCC 346
                     *********************** ********************** ******* *****

consensus_565#0      AGAGCTGTCCCTGCTGGTCATCAACACGCTGAAGAAGGACTGCCCGGATCCCAAACCTAT 540
consensus_565#1      AGAGCTGTCCCTGCTG-------------------------------------------- 362
                     ****************                                            

consensus_565#0      TGTCCGCAGGCTTGGCCTGAAGAAC 565
consensus_565#1      -------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)